MmuEX0041885 @ mm10
Exon Skipping
Gene
ENSMUSG00000000632 | Sez6
Description
seizure related gene 6 [Source:MGI Symbol;Acc:MGI:104745]
Coordinates
chr11:77953408-77963050:+
Coord C1 exon
chr11:77953408-77954067
Coord A exon
chr11:77954750-77954883
Coord C2 exon
chr11:77962855-77963050
Length
134 bp
Sequences
Splice sites
3' ss Seq
TGTCTCCTCCTGCCTCCCAGGCC
3' ss Score
9.75
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
TCTGGAAGAATTTCTTCAAGAGGGGCTAGAAAGAGAGGAAGCGCCGCAGCCTGCACTGCCCTTCCAGCCGGACTCACCTACACACTTTACTCCAAGCCCCCTCCCCCGCCTCACCAACCAGGACAACCGCCCCGTCTTTACCAGTCCGACTCCAGCCGTGGCTGCAGCACCCACCCAGCCCCACTCCAGGGAGAAACCTTGGAACCTAGAATCCAAACCCCCTGAGCTTTCTATCACATCGTCCCTTCCTCCAGGGCCGAGTATGGCAGTGCCCACACTGCTCCCAGAGGACAGACCCAGTACTACACCCCCTAGCCAAGCATGGACTCCAACTCAGGAGGGTCCTGGAGACATGGACAGACCTTGGGTTCCAGAGGTCATGTCTAAGACCACAGGGCTTGGTGTCGAGGGAACCATTGCCACCTCCACAGCTTCAGGGGATGACGAAGAGACCACTACCACCATCATTACCACTACTGTCACCACAGTTCAGCCACCAG
Seq A exon
GCCCCTGTAGCTGGAATTTCTCAGGCCCAGAGGGCTCTCTGGATTCCCCCACGGCCCCCAGCTCACCCTCTGATGTTGGCCTGGACTGTTTCTACTATATCTCTGTCTACCCTGGATATGGAGTAGAGATCAAG
Seq C2 exon
GTGGAGAACATCAGCCTTCAGGAAGGGGAGACCATCACCGTGGAGGGCCTGGGGGGCCCCGATCCACTGCCCTTGGCTAACCAGTCGTTCCTGCTGAGGGGCCAGGTCATCCGCAGCCCCACCCACCAAGCAGCCCTGAGGTTCCAGAGCCTCCCGCTACCCGCTGGGCCTGGCACTTTCCATTTCCGCTACCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000000632-'9-7,'9-6,11-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.946 A=0.470 C2=0.152
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGTACTACACCCCCTAGCC
R:
GTGATGGTCTCCCCTTCCTGA
Band lengths:
242-376
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types