DreEX0065574 @ danRer10
Exon Skipping
Gene
ENSDARG00000100876 | sez6a
Description
seizure related 6 homolog a [Source:ZFIN;Acc:ZDB-GENE-030131-8208]
Coordinates
chr10:36923483-36983836:-
Coord C1 exon
chr10:36983374-36983836
Coord A exon
chr10:36932374-36932501
Coord C2 exon
chr10:36923483-36923675
Length
128 bp
Sequences
Splice sites
3' ss Seq
TCTGTGTCTTTCTTTTCCAGCTC
3' ss Score
12.52
5' ss Seq
CAGGTCAGT
5' ss Score
8.94
Exon sequences
Seq C1 exon
TTGTCCCTCCCCCCAACCATTCAAATGTCTCAATCCCTCAAGGTTTAGTGTGTATTAGAACTTGTTCTGGTTGCATTATAGCGCGATCTATCCATCCTCGTGTTATATCTAACTCTCCTTTGCCTCTCGGTACACAAAACCAAAAATCCTCTGAAGTCTAAACACTGTCTGCTGCTGTCCGGAGTGTCTGACGGAACTGTCCGCGGTGCTGAAGCTCCGCAATCCGCTTACAGCAGCCGTGAGTCGGGATAGCTGTTTCTCTGCGCTGAGAGTCGTTTTTCAGACCTCACGGAAATCTCATCTGACATCCAGTTCCTTTACTTGGGATATTTTAAACACAAGGACAAATTACAGTGTGTTGTTAGGAGTCGTTTCAGTATGTGCGTGAGGATCGAGCTCCAAACGGACCGGCTCTTTCTGCTGCTCGTACTGAGTCTTTCAGTGATTTACACGAGCTGTCAAG
Seq A exon
CTCAGTGCGATATGAACTTCACAGACGCTGAGGGTTATATTGAGCTCCCTCCGGATGCCTCATTTGATTCCCACATGCATTGCACCTGCCTGGTTACTGTGTATCTGGGTTATGGCATTGAGATTCAG
Seq C2 exon
GTGCTGAACATTAGTTTGGATGACGGAATGGAGGCAGTTCTGGAGGATTTGGGTGGACCCATGACCTCCATTCTGGCCAACAGCTCAGGATTATCCAGGGGTTTAGTGCTGCGGAGCTCTAGTAACCAGATCTCAGTACAGTTTAGCAGTGAACGAACCACTCAGCCCGGTTTATTAATTCTGCGGTACAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000100876-'0-3,'0-2,2-3
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.023 C2=0.031
Domain overlap (PFAM):
C1:
NO
A:
PF0043115=CUB=PU(39.6=93.0)
C2:
PF0043115=CUB=PD(58.4=90.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTGCGCTGAGAGTCGTTTT
R:
CAGAACTGCCTCCATTCCGTC
Band lengths:
247-375
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]