RnoEX0079952 @ rn6
Exon Skipping
Gene
ENSRNOG00000009350 | Sez6
Description
seizure related 6 homolog [Source:RGD Symbol;Acc:619780]
Coordinates
chr10:64876585-64891311:-
Coord C1 exon
chr10:64891178-64891311
Coord A exon
chr10:64882606-64882801
Coord C2 exon
chr10:64876585-64876770
Length
196 bp
Sequences
Splice sites
3' ss Seq
TCTCTCCCATCCACCTGCAGGTG
3' ss Score
13.17
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
Exon sequences
Seq C1 exon
GCCCCTGTAGCTGGAATTTCTCAGGCCCGGAGGGCTCTCTGGATTCCCCTGCGGTCCCCAGCGTCCCCTCTGATGTTGGCCTGGACTGTCTCTACTACATCTCTGTCTACCCTGGATATGGAGTCGAGATCAAG
Seq A exon
GTGAAGAACATCAGCCTTCAGGAAGGAGAGACCATAACCGTGGAGGGCCTGGGGGGGCCTGACCCACTGCCCTTGGCTAACCAGTCTTTCCTGCTGAGGGGCCAGGTCATCCGCAGCCCCACCCACCAGGCAGCCGTGAGGTTCCAAAGCCTTCCACTTCCCGCTGGACCTGGTACTTTCCATTTCCACTACCAAG
Seq C2 exon
CCTATCTCCTGAGCTGCCACTTTCCTCGGCGTCCAGCTTATGGAGATGTGACTGTCACCAGCCTCCACCCAGGAGGCAGCGCCCGCTTCCACTGTGCCACTGGCTACCAGCTAAAGGGTGCCAGGTTCCTCACCTGTCTCAATGCCACCCAGCCCTTTTGGGATTCCCAAGAGCCTGTCTGCATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009350-'7-6,'7-5,13-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.444 A=0.106 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0008415=Sushi=WD(100=88.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGATGTTGGCCTGGACTGTC
R:
GCAGACAGGCTCTTGGGAATC
Band lengths:
247-443
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]