DreEX0065576 @ danRer10
Exon Skipping
Gene
ENSDARG00000100876 | sez6a
Description
seizure related 6 homolog a [Source:ZFIN;Acc:ZDB-GENE-030131-8208]
Coordinates
chr10:36916528-36932501:-
Coord C1 exon
chr10:36932374-36932501
Coord A exon
chr10:36923483-36923675
Coord C2 exon
chr10:36916528-36916713
Length
193 bp
Sequences
Splice sites
3' ss Seq
ATTCTTCCCTTGTATTGCAGGTG
3' ss Score
10.69
5' ss Seq
GAGGTACAA
5' ss Score
5.13
Exon sequences
Seq C1 exon
CTCAGTGCGATATGAACTTCACAGACGCTGAGGGTTATATTGAGCTCCCTCCGGATGCCTCATTTGATTCCCACATGCATTGCACCTGCCTGGTTACTGTGTATCTGGGTTATGGCATTGAGATTCAG
Seq A exon
GTGCTGAACATTAGTTTGGATGACGGAATGGAGGCAGTTCTGGAGGATTTGGGTGGACCCATGACCTCCATTCTGGCCAACAGCTCAGGATTATCCAGGGGTTTAGTGCTGCGGAGCTCTAGTAACCAGATCTCAGTACAGTTTAGCAGTGAACGAACCACTCAGCCCGGTTTATTAATTCTGCGGTACAGAG
Seq C2 exon
CCTTTGCCCTGAGCTGTGCATCTCCAACTACCCCTGATAATGGTGAGGTTTCAGTCACTGGTCTTCATGTGGGGGGCGTGGCCTATTTCTCCTGTCTGATTGGCTATCAGCTCCAGGGCCCTGCCTCCCTGACGTGCCGAAATGCCACAACACCATACTGGAGTGGCAGAGAGCCCAGGTGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000100876-'2-4,'2-3,3-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.023 A=0.031 C2=0.000
Domain overlap (PFAM):
C1:
PF0043115=CUB=PU(39.6=93.0)
A:
PF0043115=CUB=PD(58.4=90.8)
C2:
PF0008415=Sushi=WD(100=88.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCCGGATGCCTCATTTGAT
R:
TCTGCCACTCCAGTATGGTGT
Band lengths:
251-444
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]