MmuEX6087808 @ mm9
Exon Skipping
Gene
ENSMUSG00000000632 | Sez6
Description
seizure related gene 6 [Source:MGI Symbol;Acc:MGI:104745]
Coordinates
chr11:77768252-77782589:+
Coord C1 exon
chr11:77768252-77768385
Coord A exon
chr11:77776357-77776552
Coord C2 exon
chr11:77782404-77782589
Length
196 bp
Sequences
Splice sites
3' ss Seq
TCTCTCCCATCCACATGCAGGTG
3' ss Score
11.07
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
Exon sequences
Seq C1 exon
GCCCCTGTAGCTGGAATTTCTCAGGCCCAGAGGGCTCTCTGGATTCCCCCACGGCCCCCAGCTCACCCTCTGATGTTGGCCTGGACTGTTTCTACTATATCTCTGTCTACCCTGGATATGGAGTAGAGATCAAG
Seq A exon
GTGGAGAACATCAGCCTTCAGGAAGGGGAGACCATCACCGTGGAGGGCCTGGGGGGCCCCGATCCACTGCCCTTGGCTAACCAGTCGTTCCTGCTGAGGGGCCAGGTCATCCGCAGCCCCACCCACCAAGCAGCCCTGAGGTTCCAGAGCCTCCCGCTACCCGCTGGGCCTGGCACTTTCCATTTCCGCTACCAAG
Seq C2 exon
CCTATCTCCTGAGCTGCCACTTTCCCCGACGTCCAGCGTATGGAGATGTGACTGTCACCAGTCTCCACCCAGGAGGCAGCGCCCACTTCCATTGTGCCACTGGCTACCAGCTCAAGGGTGCCAGGTTCCTCACCTGTCTCAATGCCACCCAGCCCTTTTGGGATTCCCAAGAGCCTGTTTGCATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000000632-'6-6,'6-5,7-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.471 A=0.152 C2=0.000
Domain overlap (PFAM):
C1:
PF0043115=CUB=PU(44.7=93.3)
A:
PF0043115=CUB=PD(53.2=75.8)
C2:
PF0008415=Sushi=WD(100=88.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTGATGTTGGCCTGGACTG
R:
TGCAAACAGGCTCTTGGGAAT
Band lengths:
250-446
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: