GgaEX1052037 @ galGal4
Exon Skipping
Gene
ENSGALG00000026431 | SEZ6
Description
seizure related 6 homolog (mouse) [Source:HGNC Symbol;Acc:HGNC:15955]
Coordinates
chr19:5914993-5916395:-
Coord C1 exon
chr19:5916262-5916395
Coord A exon
chr19:5915475-5915667
Coord C2 exon
chr19:5914993-5915178
Length
193 bp
Sequences
Splice sites
3' ss Seq
ACACCTCACCGTCCCCAAAGGTG
3' ss Score
8.6
5' ss Seq
AAGGTATGG
5' ss Score
9.26
Exon sequences
Seq C1 exon
CACCATGCAACCGGACGCTGGCAGGTCCCGAGGGCTGGCTGGTGTCCCCAGAGCCAGCCAGTGCCCCATATGACAGCAGCATGGACTGCACCTACACCATCTCCGTCTACCCTGGCTATGGTGTAGAGATCAAG
Seq A exon
GTGCAGAACATCAGCCTGGCAGATGGGGAGACGCTGACGGTGGAGAGCGCGGGGGGCCTGGAGCCAGCGGTGTTGGCCAACGAGTCCTTCCTGCTGCGGGGCCAGGTCATCCGCAGCCCTGCCAACGTGCTCACCCTGCGCTTCCAGAGCCCCCGATCCACCAGCCCTGGCTCCTACCGCTTTCAGTACCAAG
Seq C2 exon
CCTACCTGCTGAGCTGCCCCTTCCCGGCACGGCCCGCCTTCGGTGACGTCTCGGTCAGCAGCCTGCACCCCGGTGGGGACGCCCGGTTCCGCTGCACCACGGGCTACCAGCTGCAGGGTGCCCACCTGATCACCTGCCGCAATGCCACCCGGCCCTTCTGGAGCGCCCGCGAGCCTCAGTGCATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000026431-'3-4,'3-2,4-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.467 A=0.062 C2=0.000
Domain overlap (PFAM):
C1:
PF0043115=CUB=PU(39.6=93.3)
A:
PF0043115=CUB=PD(58.5=95.4)
C2:
PF0008415=Sushi=WD(100=88.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCCATATGACAGCAGCATGG
R:
CCATGCACTGAGGCTCGC
Band lengths:
257-450
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]