BtaEX6085562 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000015979 | SEZ6
Description
seizure related 6 homolog (mouse) [Source:HGNC Symbol;Acc:HGNC:15955]
Coordinates
chr19:20887146-20904915:-
Coord C1 exon
chr19:20904782-20904915
Coord A exon
chr19:20891797-20891992
Coord C2 exon
chr19:20887146-20887331
Length
196 bp
Sequences
Splice sites
3' ss Seq
TCTGTCTATCCCATGGGCAGGTC
3' ss Score
8.32
5' ss Seq
AAGGTAGGC
5' ss Score
10.08
Exon sequences
Seq C1 exon
GCCCTTGCAGCTGGAATTTCTCAGGCCCAGAGGGCTCTCTGGACTCCCCCACAGCCTCCAACTCACCCCCTGATGTCGGCCTGGACTGTTTCTACTACATCTCTGTCTACCCTGGCTACGGTGTGGAAATCAAG
Seq A exon
GTCCAGAACATCAGCCTCCGAGAGGGGGAGACCGTGACCGTGGAGGGCCTTGGGGGGCCTGACCCACTGCCCCTGGCCAACCAGTCTTTCCTGCTGAGGGGCCAAGTCATCCGCAGCCCCACCCACCAGGCAGCCCTGAGGTTCCAGAGCCTCCCACCCCCTGCTGGGCCTGGCACCTTCCATTTCCACTACCAAG
Seq C2 exon
CCTACCTCCTGAGCTGCCACTTTCCCCGACGTCCAGCTTACGGAGCTGTGACTGTCACCAGCCTCCACCCTGGAGGTAGTGCCCGCTTCCGCTGTGCCACTGGCTACCAGCTGAAGGGTGCCAGGCTCCTTACCTGTCTCAACGCCACCCAGCCCTTCTGGGATTCTCAGGAGCCGGTCTGCATCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015979-'4-6,'4-4,5-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.489 A=0.182 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0008415=Sushi=WD(100=88.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTCTGGACTCCCCCACAG
R:
GCGTTGAGACAGGTAAGGAGC
Band lengths:
245-441
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]