RnoALTD0027864-2/3 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000027522 | Slc25a54
Description
solute carrier family 25, member 54 [Source:RGD Symbol;Acc:1583925]
Coordinates
chr2:211880418-211884575:+
Coord C1 exon
chr2:211880418-211880518
Coord A exon
chr2:211880519-211880633
Coord C2 exon
chr2:211884449-211884575
Length
115 bp
Sequences
Splice sites
5' ss Seq
GGAGTAGGT
5' ss Score
3.34
3' ss Seq
ACAAGTGTCTTCTCTTGTAGAAA
3' ss Score
8.07
Exon sequences
Seq C1 exon
TCGAAGACCTGGATCGCAATGGAGATGGCGTGGTGGACATCACGGAGCTCAGGGATGGGCTGGAACACTGGAACTCCTCCTTTGGCATAGACCCCGAGAAG
Seq A exon
GTGAGCCACTGAGAGAATGTGGCCCTGAGAATGTTGGAAAGAAGTTGCACAGACGCACAGAGCTCAAAGCCAACTTGCCGACCTGCCCTTTCCAGAAATTTCCAGAGCTTTTGGA
Seq C2 exon
AAAATTCTTAAGAGTGCAGATTCCAATGCCGATTCAGGACTGGATTTTGGAGAATTTGTGAAGTACCTTCAAGACCATGAGAAGAAAATGAAACTGGCATTCAAGAGTCTGGACAAAAATGCCGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000027522-0-0,1-0,2-0-2/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF134991=EF-hand_7=PU(64.2=70.5)
A:
NA
C2:
PF134991=EF-hand_7=PD(32.8=51.2),PF134991=EF-hand_7=PU(27.3=41.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGAAGACCTGGATCGCAATG
R:
TCGGCATTTTTGTCCAGACTCT
Band lengths:
226-341
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]