RnoEX0081988 @ rn6
Exon Skipping
Gene
ENSRNOG00000027522 | Slc25a54
Description
solute carrier family 25, member 54 [Source:RGD Symbol;Acc:1583925]
Coordinates
chr2:211880262-211901037:+
Coord C1 exon
chr2:211880262-211880518
Coord A exon
chr2:211884449-211884575
Coord C2 exon
chr2:211900950-211901037
Length
127 bp
Sequences
Splice sites
3' ss Seq
ACAAGTGTCTTCTCTTGTAGAAA
3' ss Score
8.07
5' ss Seq
ATGGTGTGT
5' ss Score
4.84
Exon sequences
Seq C1 exon
TCAGGTGCAGACCTGTGGTTCTGGACAAAAGTGGTGTGGTCCTTGGGGGTCGTAGCGGCCGCAACTGCGGGGCGATGCTAAGCTGGCTGCAAGATGTTCTGTGGCCCTCCAAGGCCCCCAAGAGTGACTATGATGACCTGGCCTTTGAGATCCTCTTCGAAGACCTGGATCGCAATGGAGATGGCGTGGTGGACATCACGGAGCTCAGGGATGGGCTGGAACACTGGAACTCCTCCTTTGGCATAGACCCCGAGAAG
Seq A exon
AAAATTCTTAAGAGTGCAGATTCCAATGCCGATTCAGGACTGGATTTTGGAGAATTTGTGAAGTACCTTCAAGACCATGAGAAGAAAATGAAACTGGCATTCAAGAGTCTGGACAAAAATGCCGATG
Seq C2 exon
GCGTAATAGATGCTTCTGAAGTAGTTGCTGCCATGAAATCATTGGGAATCCACATTTCTCTCGCTCAGGCCAACGACATCCTGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000027522_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF134991=EF-hand_7=PU(64.2=70.5)
A:
PF134991=EF-hand_7=PD(32.8=51.2),PF134991=EF-hand_7=PU(27.3=41.9)
C2:
PF134991=EF-hand_7=FE(43.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGTTCTGTGGCCCTCCAAG
R:
TTTCAGGATGTCGTTGGCCTG
Band lengths:
251-378
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]