DreEX6046380 @ danRer10
Exon Skipping
Gene
ENSDARG00000008568 | slc25a24
Description
solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 24 [Source:ZFIN;Acc:ZDB-GENE-040912-183]
Coordinates
chr20:34763129-34767357:-
Coord C1 exon
chr20:34766951-34767357
Coord A exon
chr20:34763874-34764000
Coord C2 exon
chr20:34763129-34763216
Length
127 bp
Sequences
Splice sites
3' ss Seq
TGTTGTTTTTTTTTTTTCAGAAA
3' ss Score
11.2
5' ss Seq
ATGGTAAGA
5' ss Score
9.48
Exon sequences
Seq C1 exon
CCAGCCTAGCCTGCAGGTCTACACATTAAACCCGAAACAGTGCTGAGTTTCAATAGACGGTGGCAATAAAACCATGACAACGATCGTCTAACATTGATAGTCTAGGGAGGGTCTGTTTTTTTTTCTTCCGTCCCAGTATAAACATCTGTGCTCTTCCGCAGCTCCACTGCAACCTTTGGATCGGTAAAAAAAAATACATAAATACAGCATATACATTCATCATGCATCAGCTTATAAGGAAATTCGTCTTCACCGAGTCGCATTGTTTGGAGGAGGAGGACAACACGAAAAGTTTCGCGGAGTTGTTTGAGAAGTTGGATGTGAATAAAGATGGAAAAGTGGATGTTTCCGAGCTCAAGACGGGCCTGGCTGCCATGGGCTTCTCTATGGGTAAAGGAGAAGCGCAG
Seq A exon
AAAATTGTTACCTCAGGGGATACCGATAAGGATGAAGGGCTGGACTTTGAGGAGTTTTCAAAGTATCTGAAAGAACATGAGAAAAAACTCAGGCTGACCTTTAAGAGTCTGGACAAAAATGAAGATG
Seq C2 exon
GTCGCGTCGATGCCAAAGAGATTCAACAGTCACTAAAAGACCTCGGGATTAACTTGTCAGATAAAGACGCTGAGAAGATCCTCCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000008568-'0-1,'0-0,1-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.093 C2=0.067
Domain overlap (PFAM):
C1:
PF134991=EF-hand_7=PU(65.7=74.2)
A:
PF134991=EF-hand_7=PD(31.4=51.2),PF134991=EF-hand_7=PU(26.2=39.5)
C2:
PF134991=EF-hand_7=FE(44.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
AATTCGTCTTCACCGAGTCGC
R:
TGTGGAGGATCTTCTCAGCGT
Band lengths:
254-381
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]