BtaEX0032880 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000003752 | SLC25A24
Description
Bos taurus solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 24 (SLC25A24), mRNA. [Source:RefSeq mRNA;Acc:NM_001099066]
Coordinates
chr3:35152469-35175712:+
Coord C1 exon
chr3:35152469-35152847
Coord A exon
chr3:35163809-35163935
Coord C2 exon
chr3:35175601-35175712
Length
127 bp
Sequences
Splice sites
3' ss Seq
ATTTTTTTTATTTTTTATAGAAA
3' ss Score
8.48
5' ss Seq
ATGGTTTGT
5' ss Score
4.88
Exon sequences
Seq C1 exon
TGGCCCGTCCCCCGCGCTTCTCCGGGAGGCTGGCGCCGGCGAGCTCCTCCCAGAGCCGCAGCGAAAGCGGCCACTCCCTGTGCGCCGAGGCGGCTCGTAGGGTCTCGGCTCGTCGGACTGCAAGTGGCAGTCCCTTAACCGCCAGGCCTTACACCCCTGAGCTCCCTCGGCTGGGCGGGCCAGCGCCTCCGGTATCATGCTGCGCTGGCTGCGGGGCTTCGTGCTGCCCACTGCGGCCTGCCAGGACGTGGAGCCGCCAACGCGCTACGAGACCCTCTTTCAGAAACTGGACCGCAACGGGGACGGCGTGGTGGACATCAGCGAGCTGCAGGAGGGACTCAAAAGCTTGGGCATCCCCCTGGGCCAGGACGCCGAGGAG
Seq A exon
AAAATTTTCACTACTGGTGATGTCAACAAAGATGGGAAGCTGGATTTTGAAGAATTTATGAAGTACCTTAAAGACCATGAGAAAAAAATGAAATTGGCATTTAAGAGTTTGGACAAAAATAATGATG
Seq C2 exon
CATTGATGCCGATGGGACAATGACAGTGGACTGGAATGAATGGCGAGACTACTTCTTATTTAACCCCGTTACAGATATTGAGGAAATCATCCGTTTCTGGAAACATTCTACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003752_MULTIEX1-1/2=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.033 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF134991=EF-hand_7=PU(61.9=63.9)
A:
PF134991=EF-hand_7=PD(34.9=51.2),PF134991=EF-hand_7=PU(27.3=41.9)
C2:
PF134991=EF-hand_7=PD(27.3=47.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CTTACACCCCTGAGCTCCCTC
R:
CTGTCATTGTCCCATCGGCAT
Band lengths:
258-385
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development