RnoEX6016455 @ rn6
Exon Skipping
Gene
ENSRNOG00000014338 | Slc25a25
Description
solute carrier family 25 member 25 [Source:RGD Symbol;Acc:628666]
Coordinates
chr3:11449228-11452529:-
Coord C1 exon
chr3:11452271-11452529
Coord A exon
chr3:11449400-11449526
Coord C2 exon
chr3:11449228-11449315
Length
127 bp
Sequences
Splice sites
3' ss Seq
TCCTTGCTTTGGTTTTCTAGAAA
3' ss Score
8.68
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
Exon sequences
Seq C1 exon
GGCATATCTTGTGCTAGTTTCCCAGGAACCCGGCATTCCCTACTCTTGACTTCTGCCGGCACTTGCTCCTGGTGGTAGCTGAGCACCGGGTCTCACCAGCATGCTCTGCCTGTGCCTGTATGTGCCCATCGCTGGAGAGGCTCAGACTGAATTCCAATACTTTGAGTCCAAGGGGCTTCCCACCGAGCTGAAATCCATCTTCAAACTCAGTGTCTTTATCCCCTCTCAGGAGTTCTCCACATACCGCCAATGGAAGCAG
Seq A exon
AAAATTGTGCAAGCAGGTGACAAGGACCTTGATGGGCAACTGGACTTCGAAGAGTTTGTACATTACCTCCAAGACCATGAGAAAAAACTGAGGCTGGTGTTTAAGAGTCTGGACAAAAAGAATGATG
Seq C2 exon
GGCGAATCGATGCTCAGGAGATCATGCAGTCCCTGCGGGATCTGGGTGTCAAGATCTCTGAACAGCAGGCGGAGAAGATTCTTAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000014338-'6-1,'6-0,9-1=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0003627=EF-hand_1=PU(0.1=0.0)
A:
PF0003627=EF-hand_1=PD(92.6=58.1),PF134991=EF-hand_7=PU(28.8=44.2)
C2:
PF134991=EF-hand_7=FE(43.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CTACTCTTGACTTCTGCCGGC
R:
GGACTGCATGATCTCCTGAGC
Band lengths:
252-379
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]