GgaEX6015014 @ galGal3
Exon Skipping
Gene
ENSGALG00000005095 | F1NYW3_CHICK
Description
NA
Coordinates
chr17:5436699-5454730:-
Coord C1 exon
chr17:5454464-5454730
Coord A exon
chr17:5436875-5437001
Coord C2 exon
chr17:5436699-5436786
Length
127 bp
Sequences
Splice sites
3' ss Seq
TTTGATTGTCCCCTGAACAGAAA
3' ss Score
6.67
5' ss Seq
ATGGTGAGC
5' ss Score
8.27
Exon sequences
Seq C1 exon
GCGCGGCGATCGTTGGCCTCCCCGGTGGTGAGCGGCGTGCTGTGCCCCTGCGGCTCCCCGCGGGCCGCCGCCGCGCCCGGGACCGGCGCTGAAGGGAGTGGCGGCGGCCCCTGCGGAAGGGCGGTGTGCGAGGCCTCCGAGCAGGACCGGCGGCTCCGCGCCCTGTTCCAGAAGCTGGACGTGAACCGCGACGGCGCGCTCTGCATCCACGACCTGGCCGTGGGGCTGGGCCGCCTCGGGCTGCACCGCACCGAGCTGGACCTGCTG
Seq A exon
AAAATTGTGAAGGCTGGAGACAAGGACCTGGACGGACAGCTGGACTTTGAGGAGTTTGTGCACTATCTGCAGGATCACGAAAAGAAGCTAAGGCTGGTCTTCAAGAGCTTGGATAAGAAGAATGATG
Seq C2 exon
GCCGTATCGATGCCCAGGAGATTGTACAGTCTCTTCGGGACCTGGGAGTTAAGATCTCTGAACAGCAGGCTGAAAAAATACTGAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005095-'0-6,'0-5,4-6=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.101 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF134991=EF-hand_7=PU(62.5=44.9)
A:
PF134991=EF-hand_7=PD(34.4=51.2),PF134991=EF-hand_7=PU(24.2=34.9)
C2:
PF134991=EF-hand_7=FE(46.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GACCGGCGCTGAAGGGAG
R:
ATCTTAACTCCCAGGTCCCGA
Band lengths:
242-369
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]