MmuEX6100553 @ mm10
Exon Skipping
Gene
ENSMUSG00000026819 | Slc25a25
Description
solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 25 [Source:MGI Symbol;Acc:MGI:1915913]
Coordinates
chr2:32421303-32451422:-
Coord C1 exon
chr2:32451067-32451422
Coord A exon
chr2:32421473-32421599
Coord C2 exon
chr2:32421303-32421390
Length
127 bp
Sequences
Splice sites
3' ss Seq
TCCTTATTTTGGTTCTCTAGAAA
3' ss Score
8.31
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
Exon sequences
Seq C1 exon
CCCGCGCTCGCTGTCTGAGGAAAGCCGGCGTGCTTCCGCGCTCGGGTCGCTCTCCTGCCGCCTTCAGCCCGGCGTCCGGCGCCCCCGCCTCGCGCCCGATGGTGAGCAGTGTGTTGTGCCGCTGCGTGGCCTCCCCGCCGCCGGACGCCGCCGCCACCGCCTCGTCGTCCGCCTCGTCGCCGGCTTCTGTAGGGGACCCGTGCGGCGGCGCCGTCTGTGGCGGCCCGGACCACCAGCTACGCCTGTGGAGCCTCTTCCAGACACTCGACGTCAACCGCGACGGCGGCCTGTGTGTCAACGACCTGGCGGTGGGGCTGCGGCGCCTGGGACTGCACCGCACGGAGGGCGAGCTCCGG
Seq A exon
AAAATTGTGCAAGCAGGTGACAAGGACCTTGATGGGCAACTGGACTTTGAAGAGTTTGTACATTACCTCCAAGATCATGAGAAAAAACTGAGGCTGGTGTTCAAGAGTCTGGACAAAAAGAATGATG
Seq C2 exon
GTCGAATCGATGCTCAGGAGATCATGCAGTCCCTGCGGGACCTGGGTGTCAAGATCTCGGAACAGCAGGCGGAGAAGATTCTTAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026819-'0-12,'0-11,7-12
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.140 A=0.013 C2=0.004
Domain overlap (PFAM):
C1:
PF134991=EF-hand_7=PU(63.1=47.7)
A:
PF0003627=EF-hand_1=PD(92.6=58.1),PF134991=EF-hand_7=PU(24.1=44.2)
C2:
PF0003627=EF-hand_1=PU(28.0=31.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CTCGTCGCCGGCTTCTGTAG
R:
TCCGAGATCTTGACACCCAGG
Band lengths:
245-372
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types