HsaEX6063168 @ hg38
Exon Skipping
Gene
ENSG00000148339 | SLC25A25
Description
solute carrier family 25 member 25 [Source:HGNC Symbol;Acc:HGNC:20663]
Coordinates
chr9:128068201-128101396:+
Coord C1 exon
chr9:128068201-128068580
Coord A exon
chr9:128101096-128101222
Coord C2 exon
chr9:128101309-128101396
Length
127 bp
Sequences
Splice sites
3' ss Seq
ATGTTACCTTTCTTTTCTAGAAA
3' ss Score
10.5
5' ss Seq
ATGGTAAGT
5' ss Score
11.01
Exon sequences
Seq C1 exon
TGCCGGCGTCTCCGAGCCCGCGCTCCCAGCTGCAGAGCGCCTGGCTTGCCTCCCGCGCGGTCACCGCCGGCCCGCCGCCCCCGCTCCCGCCCGCGCCCGGAGCCCCTGCCTCGCGCCCGATGGTGAGCAGTGTGTTGTGCCGCTGTGTGGCCTCCCCGCCGCCGGACGCCGCCGCCACCGCCGCCTCTTCGTCTGCCTCATCGCCGGCGTCCGTGGGGGACCCCTGCGGCGGCGCTATCTGCGGGGGCCCGGACCACCGGCTGCGCCTGTGGAGACTCTTTCAGACGCTCGACGTCAACCGGGACGGCGGCCTGTGTGTCAACGACCTGGCGGTGGGGCTGCGGCGCCTGGGACTGCACCGCACCGAGGGCGAGCTCCAG
Seq A exon
AAAATTGTACAAGCTGGAGATAAGGACCTTGATGGGCAGCTAGACTTTGAAGAATTTGTCCATTATCTCCAAGATCATGAGAAGAAGCTGAGGCTGGTGTTTAAGAGTTTGGACAAAAAGAATGATG
Seq C2 exon
GACGCATTGACGCGCAGGAGATCATGCAGTCCCTGCGGGACTTGGGAGTCAAGATATCTGAACAGCAGGCAGAAAAAATTCTCAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000148339-'0-18,'0-17,11-18
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.100 A=0.019 C2=0.007
Domain overlap (PFAM):
C1:
PF134991=EF-hand_7=PU(63.1=47.1)
A:
PF0003627=EF-hand_1=PD(92.6=58.1),PF134991=EF-hand_7=PU(28.8=44.2)
C2:
PF134991=EF-hand_7=FE(43.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTTCGTCTGCCTCATCGC
R:
GACTCCCAAGTCCCGCAGG
Band lengths:
246-373
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains