MmuEX6100553 @ mm9
Exon Skipping
Gene
ENSMUSG00000026819 | Slc25a25
Description
solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 25 [Source:MGI Symbol;Acc:MGI:1915913]
Coordinates
chr2:32276823-32286625:-
Coord C1 exon
chr2:32286512-32286625
Coord A exon
chr2:32276993-32277119
Coord C2 exon
chr2:32276823-32276910
Length
127 bp
Sequences
Splice sites
3' ss Seq
TCCTTATTTTGGTTCTCTAGAAA
3' ss Score
8.31
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
Exon sequences
Seq C1 exon
ATGACTGGGAGCCCCAAGTTGTTTCCGTCTCCGGGAAAGGTCTATCTGGATATTATTTTTGCTTTACAAAAAGAACAAAAAAGGAGCCAGGTCTTTGATCTCCCGCCCGCTGAA
Seq A exon
AAAATTGTGCAAGCAGGTGACAAGGACCTTGATGGGCAACTGGACTTTGAAGAGTTTGTACATTACCTCCAAGATCATGAGAAAAAACTGAGGCTGGTGTTCAAGAGTCTGGACAAAAAGAATGATG
Seq C2 exon
GTCGAATCGATGCTCAGGAGATCATGCAGTCCCTGCGGGACCTGGGTGTCAAGATCTCGGAACAGCAGGCGGAGAAGATTCTTAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026819-'1-9,'1-8,6-9=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.105 A=0.013 C2=0.005
Domain overlap (PFAM):
C1:
PF0003627=EF-hand_1=PU(3.6=2.6)
A:
PF0003627=EF-hand_1=PD(92.6=58.1),PF134991=EF-hand_7=PU(24.1=44.2)
C2:
PF134991=EF-hand_7=FE(38.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GGGAGCCCCAAGTTGTTTCC
R:
CTTAAGAATCTTCTCCGCCTGCT
Band lengths:
194-321
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: