GgaEX6043412 @ galGal3
Exon Skipping
Gene
ENSGALG00000001938 | E1BW83_CHICK
Description
NA
Coordinates
chr8:1200535-1212019:-
Coord C1 exon
chr8:1211837-1212019
Coord A exon
chr8:1201641-1201767
Coord C2 exon
chr8:1200535-1200622
Length
127 bp
Sequences
Splice sites
3' ss Seq
GTTACATTTTCTCCCAACAGAAA
3' ss Score
9.8
5' ss Seq
ATGGTATGC
5' ss Score
7.14
Exon sequences
Seq C1 exon
ATGCTGCCGCTCCTGCTTCGCCTCGCGCTGCCCGCCGCCTGCGACGGGAGCCGGGATGGCGACTCGCGGTACGCCAACCTCTTCAAGAAGCTGGACCTCAACGAGGATGGGAGGGTGGATATCGCCGAGCTCCAGACGGGCCTCCAGGCCATGGGCATCCCGCTAGGCAAGGAGGCGGAGGAG
Seq A exon
AAAATCTTTAAAGCTGGGGATACCAACCAGGATGGACAGCTTGATTTTGAAGAATTTATGCAGTATCTTAAAGATCATGAGAAGAAAATGAAACTGGCATTTAAGAGCCTGGACAAAAACAATGATG
Seq C2 exon
GAAAAATTGAACCATCAGAAGTCGTCCAGTCCCTCAAGATACTGGGTATAAACATTTCAGAAAAACAGGCAGAGAAGATCCTTCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001938-'0-1,'0-0,1-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.047 C2=0.033
Domain overlap (PFAM):
C1:
PF134991=EF-hand_7=PU(66.2=77.0),PF137911=Sigma_reg_C=PU(38.3=75.4),PF102234=DUF2181=PU(29.5=59.0)
A:
PF134991=EF-hand_7=PD(31.0=51.2),PF137911=Sigma_reg_C=FE(35.0=100),PF102234=DUF2181=FE(34.4=100),PF134991=EF-hand_7=PU(26.9=41.9)
C2:
PF137911=Sigma_reg_C=FE(24.2=100),PF102234=DUF2181=FE(23.8=100),PF134991=EF-hand_7=FE(43.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGCTGCCGCTCCTGCTT
R:
TCTCTGCCTGTTTTTCTGAAATGT
Band lengths:
258-385
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]