HsaEX6032492 @ hg19
Exon Skipping
Gene
ENSG00000085491 | SLC25A24
Description
solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 24 [Source:HGNC Symbol;Acc:20662]
Coordinates
chr1:108724563-108735363:-
Coord C1 exon
chr1:108735118-108735363
Coord A exon
chr1:108728450-108728576
Coord C2 exon
chr1:108724563-108724650
Length
127 bp
Sequences
Splice sites
3' ss Seq
TCTCTAATTTTTTTTTATAGAAA
3' ss Score
9.1
5' ss Seq
ATGGTGTGT
5' ss Score
4.84
Exon sequences
Seq C1 exon
ATGCTGTCTTAGGCCTCTTCCCACTGGACGTGTGTGGTGGGCAGAGATCCCGTTCGTCGGTCGCACTTCCACCCCGCTGGGGCTCACTCAGGCCGCGGAGCTGCGAGGGAGACATCCTCGATGGACTCCCTCTACGGAGATCTCTTTTGGTACCTGGACTATAACAAGGATGGGACCTTGGACATTTTTGAGCTTCAGGAAGGCCTGGAGGATGTAGGGGCCATTCAATCTCTAGAGGAAGCGAAG
Seq A exon
AAAATTTTTACTACTGGAGATGTCAACAAAGATGGGAAGCTGGATTTTGAAGAATTTATGAAGTACCTTAAAGACCATGAGAAGAAAATGAAATTGGCATTTAAGAGTTTAGACAAAAATAATGATG
Seq C2 exon
GAAAAATTGAGGCTTCAGAAATTGTCCAGTCTCTCCAGACACTGGGTCTGACTATTTCTGAACAACAAGCAGAGTTGATTCTTCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000085491-'2-5,'2-3,3-5=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.012 C2=0.000
Domain overlap (PFAM):
C1:
PF134991=EF-hand_7=PU(60.7=88.1)
A:
PF134991=EF-hand_7=PD(36.1=51.2),PF134991=EF-hand_7=PU(27.3=41.9)
C2:
PF134991=EF-hand_7=FE(43.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTGTGGTGGGCAGAGATC
R:
ACTGGACAATTTCTGAAGCCTCA
Band lengths:
247-374
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)