HsaEX6032492 @ hg38
Exon Skipping
Gene
ENSG00000085491 | SLC25A24
Description
solute carrier family 25 member 24 [Source:HGNC Symbol;Acc:HGNC:20662]
Coordinates
chr1:108181941-108200358:-
Coord C1 exon
chr1:108199956-108200358
Coord A exon
chr1:108185828-108185954
Coord C2 exon
chr1:108181941-108182028
Length
127 bp
Sequences
Splice sites
3' ss Seq
TCTCTAATTTTTTTTTATAGAAA
3' ss Score
9.1
5' ss Seq
ATGGTGTGT
5' ss Score
4.84
Exon sequences
Seq C1 exon
AGCGGCGGGACGGCCACACCCTGCGCTCCGCGCGGGCTCGGGTGGGGTCTCCGCTCCTGCGCCCTGCGCCCTGCGCGCCGCAGCCGCAACCCCGACGGCGCCCCAAACGCTGTTGCGCCGCGCGCCCCGCCCAGCCCGGCCTCGCGCTGGTCCCGGTCTCGCCCCGCAGCCCTCGATCTCCCGTGACTTCCTCGGCCAGGCCGCCTGCGCCTCTGGGACCATGTTGCGCTGGCTGCGGGACTTCGTGCTGCCCACCGCGGCCTGCCAGGACGCGGAGCAGCCGACGCGCTACGAGACCCTCTTCCAGGCACTGGACCGCAATGGGGACGGAGTGGTGGACATCGGCGAGCTGCAGGAGGGGCTCAGGAACCTGGGCATCCCTCTGGGCCAGGACGCCGAGGAG
Seq A exon
AAAATTTTTACTACTGGAGATGTCAACAAAGATGGGAAGCTGGATTTTGAAGAATTTATGAAGTACCTTAAAGACCATGAGAAGAAAATGAAATTGGCATTTAAGAGTTTAGACAAAAATAATGATG
Seq C2 exon
GAAAAATTGAGGCTTCAGAAATTGTCCAGTCTCTCCAGACACTGGGTCTGACTATTTCTGAACAACAAGCAGAGTTGATTCTTCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000085491-'0-8,'0-6,9-8
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.052 A=0.008 C2=0.000
Domain overlap (PFAM):
C1:
PF134991=EF-hand_7=PU(65.7=75.4)
A:
PF134991=EF-hand_7=PD(36.1=51.2),PF134991=EF-hand_7=PU(27.3=41.9)
C2:
PF134991=EF-hand_7=FE(43.9=100)
Main Skipping Isoform:
ENST00000565488fB6415
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGATCTCCCGTGACTTCCTCG
R:
TGGACAATTTCTGAAGCCTCA
Band lengths:
258-385
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains