MmuEX1023864 @ mm10
Exon Skipping
Gene
ENSMUSG00000040322 | Slc25a24
Description
solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 24 [Source:MGI Symbol;Acc:MGI:1917160]
Coordinates
chr3:109123149-109149570:+
Coord C1 exon
chr3:109123149-109123387
Coord A exon
chr3:109136212-109136338
Coord C2 exon
chr3:109149483-109149570
Length
127 bp
Sequences
Splice sites
3' ss Seq
GTTTTTTTTTTTTCCTGTAGAAA
3' ss Score
10.79
5' ss Seq
ACGGTGTGT
5' ss Score
6.96
Exon sequences
Seq C1 exon
ACAGGCCTCCGCACTCGGATCGCGCCCCACCAGCTCACGGTGACTTCCCCGGGACCATGCTGCGCTGGCTGCGGGCCTTTGTGCTGCCCACCGCCGCCTGCCACGACGCGGAGCCGCCCACACGCTACGAAACGCTCTTCCGGGCGCTGGACCGCAATGGGGACGGCGTGGTGGACATCGGAGAGCTGCAGCAGGGGCTGCAAAGCCTGGGCATCCCGCTGGGCCAGGACGCGGAGGAG
Seq A exon
AAAATTTTCACCACTGGCGATGTCAACAAAGATGGGAAGCTGGATTTTGAAGAATTTATGAAATACCTGAAAGACCATGAGAAGAAAATGAAATTAGCATTTAAAAGTTTGGACAAGAATAATGACG
Seq C2 exon
GGAAAATCGAGCCTTCTGAAATTGTCCAGTCTCTCCAGATGCTCGGTTTACATATTTCTGAAAAGCAAGCAGAGCTGATTCTTCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000040322-'0-4,'0-1,7-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.021 A=0.023 C2=0.000
Domain overlap (PFAM):
C1:
PF134991=EF-hand_7=PU(63.6=68.9)
A:
PF134991=EF-hand_7=PD(33.3=51.2),PF134991=EF-hand_7=PU(27.3=41.9)
C2:
PF134991=EF-hand_7=FE(43.9=100)
Main Skipping Isoform:
ENSMUST00000029477fB16833
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CACCAGCTCACGGTGACTTC
R:
CGAGCATCTGGAGAGACTGGA
Band lengths:
257-384
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types