RnoEX6011160 @ rn6
Exon Skipping
Gene
ENSRNOG00000020470 | Slc25a24
Description
solute carrier family 25 member 24 [Source:RGD Symbol;Acc:1311982]
Coordinates
chr2:211930326-211943138:+
Coord C1 exon
chr2:211930326-211930680
Coord A exon
chr2:211939398-211939524
Coord C2 exon
chr2:211943051-211943138
Length
127 bp
Sequences
Splice sites
3' ss Seq
TGTTTGTTTTGTTTCTGTAGAAA
3' ss Score
9.43
5' ss Seq
ACGGTGTGT
5' ss Score
6.96
Exon sequences
Seq C1 exon
CTCCGCCCCGAGCAGCAGCTGGGCGGCCACACCCTGTGCCGAGCTCGGTTCCTGTGAGCCAGAAGCCTCGCCCCCCGAAGACGCTCCAGACGCTCGGAGGCCACCGCCTCACTCCACCAGGCCTCAGCACTCGGATCCTGCCTCGCCAGCTCGCCGCGAATTCCCCCCGACCATGCTGCGCTGGCTGCGGGCCTTCGTGCTGCCCACCGCCGTCTGCCAGGACGCGGAGCCGCCCACGCGCTACGAGACGCTCTTCCGGGCGCTGGACCGCAATGGGGACGGCGTGGTGGATATCGGAGAGCTGCAGCAGGGGCTGCAGAGCCTGGGCATCCCGCTGGGCCAGGCCGCCGAGGAG
Seq A exon
AAAATTTTCACCACTGGCGATGTCAACAAAGATGGGAAACTGGATTTTGAAGAATTTATGAAATACCTGAAAGACCATGAGAAGAAAATGAAATTAGCATTTAAAAGTCTGGACAAGAATAATGACG
Seq C2 exon
GGAAAATCGAGCCTTTTGAAATCGTCCAGTCTCTCCAGATGCTGGGCTTAAATATTTCTGAAAAGCAAGCAGAGCTGATTCTTCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000020470-'0-2,'0-1,2-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.041 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF134991=EF-hand_7=PU(63.6=68.9)
A:
PF134991=EF-hand_7=PD(33.3=51.2),PF134991=EF-hand_7=PU(27.3=41.9)
C2:
PF134991=EF-hand_7=FE(43.9=100)
Main Skipping Isoform:
ENSRNOT00000027765fB13566
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCACTCGGATCCTGCCTC
R:
TGGACGATTTCAAAAGGCTCGA
Band lengths:
258-385
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]