RnoEX0081856 @ rn6
Exon Skipping
Gene
ENSRNOG00000047781 | Slc25a23
Description
solute carrier family 25 member 23 [Source:RGD Symbol;Acc:1588586]
Coordinates
chr9:9988055-9990797:+
Coord C1 exon
chr9:9988055-9988209
Coord A exon
chr9:9989488-9989614
Coord C2 exon
chr9:9990710-9990797
Length
127 bp
Sequences
Splice sites
3' ss Seq
CTTCTGTCTCTCTCTACTAGGGC
3' ss Score
11.67
5' ss Seq
ATGGTGAGA
5' ss Score
7.23
Exon sequences
Seq C1 exon
CCATGCGGGGGGGCTCAGGCGACGCGGAGCGGCGGCAGCGCTGGGGTCGCCTGTTCGAGGAACTAGACAGCAACAAGGACGGCCGCGTGGACGTGCACGAGTTGCGCCAGGGGCTGGCTAGGCTGGGAAGGGGCGATCCGGACCGTGCACAGCAG
Seq A exon
GGCATCTCCTCTGACTGGGACAGTGATGCAGATGGCGGCCTCAGCCTGGAGGAGTTTACTCAGTACCTGCAGGAACGGGAGCAGCGCCTTCTGCTCATGTTTCACAGCCTTGACCGGAACCAGGATG
Seq C2 exon
GTCACATCGATGTCTCTGAGATTCAGCAGAGCTTCCGTGCACTGGGTTTCTCCATCTCAATGGAGCAAGCAGAGAAAATCCTACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000047781-'0-4,'0-1,2-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.525 A=0.151 C2=0.000
Domain overlap (PFAM):
C1:
PF134991=EF-hand_7=PU(63.1=80.4)
A:
PF134991=EF-hand_7=PD(33.8=51.2),PF134991=EF-hand_7=PU(22.5=41.9)
C2:
PF134991=EF-hand_7=FE(36.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGGGTCGCCTGTTCGAG
R:
TGTGTAGGATTTTCTCTGCTTGCT
Band lengths:
202-329
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]