DreEX0072294 @ danRer10
Exon Skipping
Gene
ENSDARG00000005690 | slc25a23a
Description
solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 23a [Source:ZFIN;Acc:ZDB-GENE-121214-154]
Coordinates
chr1:54309871-54320095:-
Coord C1 exon
chr1:54319467-54320095
Coord A exon
chr1:54310529-54310655
Coord C2 exon
chr1:54309871-54309958
Length
127 bp
Sequences
Splice sites
3' ss Seq
TGTGTATGCCCTATATTCAGCAG
3' ss Score
4.21
5' ss Seq
ATGGTTAGT
5' ss Score
7.07
Exon sequences
Seq C1 exon
GCGCGATTTTCTCCTCGTCTCCAAATGTCACGGTACGAATGGACAGCAAACGGCGGCACGCGCGTGGATTTCCTGGAAGTACCGCATTATTATTCGTGATTGCGAAAGCTTCCTGGTTCCCGTAGTAGCGATACACAGCTGTTTGACGCCGTCTGCCAAACGCGACTGTCAGGACGCAACTCTCAGAACGCGACTCTCAGAACGCGACTCTGAGGACGCGACGCGAGGGGTTTTATATTTCGCCTTTTTCTGGACGCATTCGGAAGTCTTTTCCGCCGGAGCCGATGTGTATACGAGGGTGACCGCGCGTGGATCTCATCATGTGGCCGCGGGGATGGACCCAGGCGCGCTGTCAGGACAGCGGGGTGGACCAAGACCGCGAGCAGCTCTGGGCCGAACTCTTCCAGCAGCTGGACCTCAATAAAGACGGCCGGGTGGATGTCAACGAGCTGCGGATCGGACTCGCAGCCCGCGGGCTATCCTGGAGCTCGGTGGAGGAG
Seq A exon
CAGATTGTACGAGCGGGAGACATCAATCACGACGGTCAGCTGGACTTCGAAGAGTTTACCGAGTACCTGCGCTCACATGAGAAACGCCTTAGACTCATGTTTCGCAGCCTGGACCGAAACAATGATG
Seq C2 exon
GTGAAGTGGATGTCGGGGAGATCCAGCAGTCCTTACACAATCTCGGCGTGGACATCACACTAGAACAGGCTGCTAAAATACTGCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000005690-'0-2,'0-0,2-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.033 A=0.000 C2=0.017
Domain overlap (PFAM):
C1:
PF134991=EF-hand_7=PU(65.2=71.7)
A:
PF134991=EF-hand_7=PD(32.4=51.2),PF134991=EF-hand_7=PU(23.8=34.9)
C2:
PF134991=EF-hand_7=FE(46.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGATCTCATCATGTGGCCG
R:
GTCCACGCCGAGATTGTGTAA
Band lengths:
245-372
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]