BtaEX6038715 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000003491 | SLC25A23
Description
solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 23 [Source:HGNC Symbol;Acc:HGNC:19375]
Coordinates
chr7:19235826-19237868:+
Coord C1 exon
chr7:19235826-19236026
Coord A exon
chr7:19237096-19237222
Coord C2 exon
chr7:19237781-19237868
Length
127 bp
Sequences
Splice sites
3' ss Seq
TGACCTTTCTCCCCTGCCAGGGC
3' ss Score
10.79
5' ss Seq
ATGGTAAGG
5' ss Score
9.33
Exon sequences
Seq C1 exon
TGAGGCCGCCGCTGCCGGGCCTCCCCTCCCCCCCGGGCTGGCGCCATGCGGGGGGGCCCGGGCGAGGCCGAGCGGCGTCAGCGCTGGGGTCGCCTCTTCGAAGAGCTGGACAGTAACAAGGATGGTCGCGTGGACATCCGCGAGTTGCGCCAGGGACTGGCCCGGCTGGGCGGGGGCGATCCGGACCGCGGCGCCCAACAG
Seq A exon
GGCATCTCCCCTGAGGGTGACACTGACCCAGATGGCGGCCTTGACCTGGAGGAGTTTATCCTCTACCTGCAGGAGCGGGAACAGCGCCTTCTACTTCTGTTCCACAGTCTGGACCGGAATCAGGATG
Seq C2 exon
GTCAGATTGACGTCTCTGAGATCCAGCAGAGTTTCCGAGCCCTAGGTATTTCCATCTCACTGGAACAGGCAGAGAAAATCCTGCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003491-'3-3,'3-1,4-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.500 A=0.233 C2=0.000
Domain overlap (PFAM):
C1:
PF134991=EF-hand_7=PU(63.6=80.8)
A:
PF134991=EF-hand_7=PD(33.3=51.2),PF134991=EF-hand_7=PU(30.4=48.8)
C2:
PF134991=EF-hand_7=FE(42.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GGGGTCGCCTCTTCGAAGA
R:
TGTGCAGGATTTTCTCTGCCT
Band lengths:
203-330
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]