MmuEX6078687 @ mm9
Exon Skipping
Gene
ENSMUSG00000046329 | Slc25a23
Description
solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 23 [Source:MGI Symbol;Acc:MGI:1914222]
Coordinates
chr17:57196005-57199286:-
Coord C1 exon
chr17:57198944-57199286
Coord A exon
chr17:57197531-57197657
Coord C2 exon
chr17:57196005-57196092
Length
127 bp
Sequences
Splice sites
3' ss Seq
CCCCTTTTTTCCTCTGCTAGGGT
3' ss Score
9.96
5' ss Seq
ATGGTGAGA
5' ss Score
7.23
Exon sequences
Seq C1 exon
CTGGCGCGGGCGGGGACGACTAGCATTTATCACTTCCAGCAAGTGCCGGAGCTCGGCCCCGCACTGAAGAGGCTGCGGTGCGGGTGGGCGCGGGAGCTGGCTTTGTGGGGACCCCGGGGGGGAGGGGGAGCCAGAAAGCCCCCGCCGAGGCCGTCGCTGCGGGGCCTCCCCTCCCCCCTGGGCGGGCGCCATGCGGGGGGGCTCAAGCGACGCGGAGCGGCGGCAGCGCTGGGGTCGCCTGTTCGAGGAACTAGACAGCAACAAGGACGGCCGCGTGGACGTGCACGAGTTGCGCCAGGGGCTGGCCAGGCTGGGAAGGGGAGATCCGGACCGTGCACAGCAG
Seq A exon
GGTGTCTCCTCTGACTGGGATGCTGATCCTGATGGTGGCCTCAGCCTGGAGGAGTTTACTCGCTACCTGCAGGAACGGGAGCAGCGCCTTCTGCTCATGTTTCACAGCCTTGACCGGAACCAAGATG
Seq C2 exon
GTCACATAGATGTCTCTGAGATTCAACAGAGCTTCCGAGCACTAGGTATCTCCATCTCACTGGAGCAAGCAGAGAAAATCCTACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000046329-'0-2,'0-0,1-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.471 A=0.256 C2=0.000
Domain overlap (PFAM):
C1:
PF134991=EF-hand_7=PU(63.1=80.4)
A:
PF134991=EF-hand_7=PD(33.8=51.2),PF134991=EF-hand_7=PU(28.4=44.2)
C2:
PF134991=EF-hand_7=FE(43.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GGGAGCCAGAAAGCCCCC
R:
GCTCGGAAGCTCTGTTGAATCT
Band lengths:
258-385
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: