RnoEX0081987 @ rn6
Exon Skipping
Gene
ENSRNOG00000027522 | Slc25a54
Description
solute carrier family 25, member 54 [Source:RGD Symbol;Acc:1583925]
Coordinates
chr2:211884449-211906317:+
Coord C1 exon
chr2:211884449-211884575
Coord A exon
chr2:211900950-211901037
Coord C2 exon
chr2:211906206-211906317
Length
88 bp
Sequences
Splice sites
3' ss Seq
GTGTTTTTTACTTTTTAAAGGCG
3' ss Score
7
5' ss Seq
AAGGTCAGC
5' ss Score
7.09
Exon sequences
Seq C1 exon
AAAATTCTTAAGAGTGCAGATTCCAATGCCGATTCAGGACTGGATTTTGGAGAATTTGTGAAGTACCTTCAAGACCATGAGAAGAAAATGAAACTGGCATTCAAGAGTCTGGACAAAAATGCCGATG
Seq A exon
GCGTAATAGATGCTTCTGAAGTAGTTGCTGCCATGAAATCATTGGGAATCCACATTTCTCTCGCTCAGGCCAACGACATCCTGAAAAG
Seq C2 exon
CATGGATGCCGATGGGTCAATGACAGTAGACTGGGATGAATGGAGAGACTACTTTTTCTTTCACCCTGCAAAAAATGTCACCGACATTATTCGTTTCTGGAAGCATTCTACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000027522-'3-2,'3-1,4-2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF134991=EF-hand_7=PD(32.8=51.2),PF134991=EF-hand_7=PU(27.3=41.9)
A:
PF134991=EF-hand_7=FE(43.9=100)
C2:
PF134991=EF-hand_7=PD(27.3=47.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGTGCAGATTCCAATGCCG
R:
AGTCTCTCCATTCATCCCAGTCT
Band lengths:
167-255
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]