GgaEX6043413 @ galGal3
Exon Skipping
Gene
ENSGALG00000001938 | E1BW83_CHICK
Description
NA
Coordinates
chr8:1200009-1201767:-
Coord C1 exon
chr8:1201641-1201767
Coord A exon
chr8:1200535-1200622
Coord C2 exon
chr8:1200009-1200120
Length
88 bp
Sequences
Splice sites
3' ss Seq
ATTTCTTTTTATGTTTCAAGGAA
3' ss Score
8.17
5' ss Seq
AAGGTCAGA
5' ss Score
6.8
Exon sequences
Seq C1 exon
AAAATCTTTAAAGCTGGGGATACCAACCAGGATGGACAGCTTGATTTTGAAGAATTTATGCAGTATCTTAAAGATCATGAGAAGAAAATGAAACTGGCATTTAAGAGCCTGGACAAAAACAATGATG
Seq A exon
GAAAAATTGAACCATCAGAAGTCGTCCAGTCCCTCAAGATACTGGGTATAAACATTTCAGAAAAACAGGCAGAGAAGATCCTTCAAAG
Seq C2 exon
TATTGATGCTGATGGAACAATGTCAGTAGATTGGAATGAGTGGAGAGATCATTTTATGTTTAACCCCGCTACAGACATAGAGGAAATAGTCCGGTATTGGAAACATTCCACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001938-'1-2,'1-1,2-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.047 A=0.033 C2=0.000
Domain overlap (PFAM):
C1:
PF134991=EF-hand_7=PD(31.0=51.2),PF137911=Sigma_reg_C=FE(35.0=100),PF102234=DUF2181=FE(34.4=100),PF134991=EF-hand_7=PU(26.9=41.9)
A:
PF137911=Sigma_reg_C=FE(24.2=100),PF102234=DUF2181=FE(23.8=100),PF134991=EF-hand_7=FE(43.3=100)
C2:
PF137911=Sigma_reg_C=PD(0.8=2.6),PF102234=DUF2181=PD(10.7=34.2),PF134991=EF-hand_7=PD(28.4=50.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CCAACCAGGATGGACAGCTTG
R:
TGTCTGTAGCGGGGTTAAACA
Band lengths:
182-270
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]