GgaEX6043413 @ galGal4
Exon Skipping
Gene
ENSGALG00000001938 | SLC25A24
Description
solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 24 [Source:HGNC Symbol;Acc:HGNC:20662]
Coordinates
chr8:1191611-1193395:-
Coord C1 exon
chr8:1193243-1193395
Coord A exon
chr8:1192137-1192224
Coord C2 exon
chr8:1191611-1191722
Length
88 bp
Sequences
Splice sites
3' ss Seq
ATTTCTTTTTATGTTTCAAGGAA
3' ss Score
8.17
5' ss Seq
AAGGTCAGA
5' ss Score
6.8
Exon sequences
Seq C1 exon
TCAAGTGTTACATTTTCTCCCAACAGAAAATCTTTAAAGCTGGGGATACCAACCAGGATGGACAGCTTGATTTTGAAGAATTTATGCAGTATCTTAAAGATCATGAGAAGAAAATGAAACTGGCATTTAAGAGCCTGGACAAAAACAATGATG
Seq A exon
GAAAAATTGAACCATCAGAAGTCGTCCAGTCCCTCAAGATACTGGGTATAAACATTTCAGAAAAACAGGCAGAGAAGATCCTTCAAAG
Seq C2 exon
TATTGATGCTGATGGAACAATGTCAGTAGATTGGAATGAGTGGAGAGATCATTTTATGTTTAACCCCGCTACAGACATAGAGGAAATAGTCCGGTATTGGAAACATTCCACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001938-'1-2,'1-1,2-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0003627=EF-hand_1=WD(100=51.9),PF134991=EF-hand_7=PU(29.4=38.5)
A:
PF134991=EF-hand_7=FE(42.6=100)
C2:
PF134991=EF-hand_7=PD(26.5=47.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CCAACCAGGATGGACAGCTTG
R:
TGTCTGTAGCGGGGTTAAACA
Band lengths:
182-270
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]