MmuEX0042865 @ mm10
Exon Skipping
Gene
ENSMUSG00000040322 | Slc25a24
Description
solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 24 [Source:MGI Symbol;Acc:MGI:1917160]
Coordinates
chr3:109136212-109155105:+
Coord C1 exon
chr3:109136212-109136338
Coord A exon
chr3:109149483-109149570
Coord C2 exon
chr3:109154994-109155105
Length
88 bp
Sequences
Splice sites
3' ss Seq
GCTCTTTTCATTGTCCGAAGGGA
3' ss Score
7.4
5' ss Seq
AAGGTAAGC
5' ss Score
10.22
Exon sequences
Seq C1 exon
AAAATTTTCACCACTGGCGATGTCAACAAAGATGGGAAGCTGGATTTTGAAGAATTTATGAAATACCTGAAAGACCATGAGAAGAAAATGAAATTAGCATTTAAAAGTTTGGACAAGAATAATGACG
Seq A exon
GGAAAATCGAGCCTTCTGAAATTGTCCAGTCTCTCCAGATGCTCGGTTTACATATTTCTGAAAAGCAAGCAGAGCTGATTCTTCAAAG
Seq C2 exon
CATCGACTCTGATGGGACGATGACCGTGGACTGGAATGAATGGAGGGATTACTTTTTATTTAACCCTGTGACAGACATTGAGGAAATTATCCGTTTCTGGAAACACTCTACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000040322_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.023 A=0.000 C2=0.111
Domain overlap (PFAM):
C1:
PF134991=EF-hand_7=PD(33.3=51.2),PF134991=EF-hand_7=PU(27.3=41.9)
A:
PF134991=EF-hand_7=FE(43.9=100)
C2:
PF134991=EF-hand_7=PD(27.3=47.4)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TTCACCACTGGCGATGTCAAC
R:
CCTCCATTCATTCCAGTCCACG
Band lengths:
167-255
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types