DreEX0072312 @ danRer10
Exon Skipping
Gene
ENSDARG00000010572 | slc25a25a
Description
solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 25a [Source:ZFIN;Acc:ZDB-GENE-040426-2396]
Coordinates
chr8:2555599-2556538:-
Coord C1 exon
chr8:2556412-2556538
Coord A exon
chr8:2556237-2556324
Coord C2 exon
chr8:2555599-2555710
Length
88 bp
Sequences
Splice sites
3' ss Seq
ATTACTTTGCTCCATATCAGGTC
3' ss Score
7.82
5' ss Seq
AAGGTGAAA
5' ss Score
4.51
Exon sequences
Seq C1 exon
AAAAGCCTGAAAACGGAAGAGAAAGAGCATGATGGCCAGCTGGACTTTGAAGAGTTTGTTCACTACCTCCAAGACCATGAGAAAGACCTGAAGCTTGTCTTTAAGAGCATGGACAGAAAGATTGCAG
Seq A exon
GTCAGGTGAACGCCAACGACATTGTGAACTCTCTGCGAGATCTTGGTGTCCACATTTCCCTAAAGCAAGCGGAGAAAGTCCTTAAAAG
Seq C2 exon
CATGGACAAAAACGGCACAATGACTATTGACTGGAATGAATGGAAGAAGTATCCCACGCTACAGCCTGCCGAAAACATTCCCGAAATCATCCTGTACTGGAAACACTCAACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000010572-'5-2,'5-1,6-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.023 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0003627=EF-hand_1=WD(100=44.2),PF134991=EF-hand_7=PU(28.8=44.2)
A:
PF134991=EF-hand_7=FE(43.9=100)
C2:
PF134991=EF-hand_7=PD(25.8=44.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GAAAGAGCATGATGGCCAGCT
R:
AGGCTGTAGCGTGGGATACTT
Band lengths:
174-262
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]