HsaEX6063167 @ hg38
Exon Skipping
Gene
ENSG00000148339 | SLC25A25
Description
solute carrier family 25 member 25 [Source:HGNC Symbol;Acc:HGNC:20663]
Coordinates
chr9:128101096-128102481:+
Coord C1 exon
chr9:128101096-128101222
Coord A exon
chr9:128101309-128101396
Coord C2 exon
chr9:128102370-128102481
Length
88 bp
Sequences
Splice sites
3' ss Seq
CACGGCCTCTGTTCTTGCAGGAC
3' ss Score
10.96
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
Exon sequences
Seq C1 exon
AAAATTGTACAAGCTGGAGATAAGGACCTTGATGGGCAGCTAGACTTTGAAGAATTTGTCCATTATCTCCAAGATCATGAGAAGAAGCTGAGGCTGGTGTTTAAGAGTTTGGACAAAAAGAATGATG
Seq A exon
GACGCATTGACGCGCAGGAGATCATGCAGTCCCTGCGGGACTTGGGAGTCAAGATATCTGAACAGCAGGCAGAAAAAATTCTCAAGAG
Seq C2 exon
CATGGATAAAAACGGCACGATGACCATTGACTGGAACGAGTGGAGAGACTACCACCTCCTCCACCCCGTGGAAAACATCCCCGAGATCATCCTCTACTGGAAGCATTCCACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000148339-'11-20,'11-18,12-20=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.019 A=0.007 C2=0.005
Domain overlap (PFAM):
C1:
PF0003627=EF-hand_1=PD(92.6=58.1),PF134991=EF-hand_7=PU(28.8=44.2)
A:
PF134991=EF-hand_7=FE(43.9=100)
C2:
PF134991=EF-hand_7=PD(25.8=44.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTTGATGGGCAGCTAGACT
R:
GGTGGAGGAGGTGGTAGTCTC
Band lengths:
167-255
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains