MmuEX6100554 @ mm10
Exon Skipping
Gene
ENSMUSG00000026819 | Slc25a25
Description
solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 25 [Source:MGI Symbol;Acc:MGI:1915913]
Coordinates
chr2:32420305-32421599:-
Coord C1 exon
chr2:32421473-32421599
Coord A exon
chr2:32421303-32421390
Coord C2 exon
chr2:32420305-32420416
Length
88 bp
Sequences
Splice sites
3' ss Seq
AATGGTTCTCGTTGTCACAGGTC
3' ss Score
9.02
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
Exon sequences
Seq C1 exon
AAAATTGTGCAAGCAGGTGACAAGGACCTTGATGGGCAACTGGACTTTGAAGAGTTTGTACATTACCTCCAAGATCATGAGAAAAAACTGAGGCTGGTGTTCAAGAGTCTGGACAAAAAGAATGATG
Seq A exon
GTCGAATCGATGCTCAGGAGATCATGCAGTCCCTGCGGGACCTGGGTGTCAAGATCTCGGAACAGCAGGCGGAGAAGATTCTTAAGAG
Seq C2 exon
CATGGATAAGAATGGCACGATGACCATCGACTGGAACGAGTGGAGGGACTACCACCTCCTGCACCCTGTGGAGAACATCCCGGAGATCATCCTGTACTGGAAGCACTCGACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026819-'7-15,'7-12,8-15=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.013 A=0.004 C2=0.003
Domain overlap (PFAM):
C1:
PF0003627=EF-hand_1=PD(92.6=58.1),PF134991=EF-hand_7=PU(24.1=44.2)
A:
PF0003627=EF-hand_1=PU(28.0=31.8)
C2:
PF0003627=EF-hand_1=PD(68.0=44.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GACCTTGATGGGCAACTGGAC
R:
GATGTTCTCCACAGGGTGCAG
Band lengths:
182-270
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types