GgaEX1053085 @ galGal3
Exon Skipping
Gene
ENSGALG00000005095 | F1NYW3_CHICK
Description
NA
Coordinates
chr17:5435784-5437001:-
Coord C1 exon
chr17:5436875-5437001
Coord A exon
chr17:5436699-5436786
Coord C2 exon
chr17:5435784-5435895
Length
88 bp
Sequences
Splice sites
3' ss Seq
TCGGTGCCTTCTCTTTGCAGGCC
3' ss Score
11.85
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
Exon sequences
Seq C1 exon
AAAATTGTGAAGGCTGGAGACAAGGACCTGGACGGACAGCTGGACTTTGAGGAGTTTGTGCACTATCTGCAGGATCACGAAAAGAAGCTAAGGCTGGTCTTCAAGAGCTTGGATAAGAAGAATGATG
Seq A exon
GCCGTATCGATGCCCAGGAGATTGTACAGTCTCTTCGGGACCTGGGAGTTAAGATCTCTGAACAGCAGGCTGAAAAAATACTGAAGAG
Seq C2 exon
CATGGATAAAAATGGGACGATGACAATTGACTGGAACGAGTGGCGAGACTATCACCTGCTGCACCCAGTGGAGAACATTCCTGAGATCATCCTGTACTGGAAGCACTCCACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005095-'4-9,'4-6,5-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF134991=EF-hand_7=PD(34.4=51.2),PF134991=EF-hand_7=PU(24.2=34.9)
A:
PF134991=EF-hand_7=FE(46.8=100)
C2:
PF134991=EF-hand_7=PD(27.4=44.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGAAGGCTGGAGACAAGGA
R:
ATAGTCTCGCCACTCGTTCCA
Band lengths:
174-262
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]