BtaEX6046332 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000011912 | SLC25A25
Description
Bos taurus solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 25 (SLC25A25), mRNA. [Source:RefSeq mRNA;Acc:NM_001038145]
Coordinates
chr11:98753007-98754413:+
Coord C1 exon
chr11:98753007-98753133
Coord A exon
chr11:98753223-98753310
Coord C2 exon
chr11:98754302-98754413
Length
88 bp
Sequences
Splice sites
3' ss Seq
CATGGCCTTTGTTGTTCCAGGGC
3' ss Score
10.45
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
Exon sequences
Seq C1 exon
AAAATCGTACAAGCTGGCGACAAAGACCTGGATGGGCAGCTAGACTTCGAAGAGTTCGTCCACTATCTCCAAGATCACGAGAAGAAACTGAGGCTGGTGTTCAAGAGTTTGGACAAAAAGAATGATG
Seq A exon
GGCGGATCGACGCCCAGGAGATCATGCAGTCCCTGCGGGACCTGGGGGTCAAGATATCTGAGCAGCAGGCAGAAAAAATCCTCAAGAG
Seq C2 exon
CATGGACAAAAATGGCACGATGACCATCGACTGGAACGAGTGGCGAGACTATCACCTCCTGCACCCCGTGGAGAACATCCCTGAGATCATCCTCTACTGGAAGCACTCCACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011912-'4-3,'4-1,5-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0003627=EF-hand_1=PD(92.6=58.1),PF134991=EF-hand_7=PU(28.8=44.2)
A:
PF134991=EF-hand_7=FE(43.9=100)
C2:
PF134991=EF-hand_7=PD(25.8=44.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TACAAGCTGGCGACAAAGACC
R:
ATAGTCTCGCCACTCGTTCCA
Band lengths:
172-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]