HsaEX6032493 @ hg38
Exon Skipping
Gene
ENSG00000085491 | SLC25A24
Description
solute carrier family 25 member 24 [Source:HGNC Symbol;Acc:HGNC:20662]
Coordinates
chr1:108161182-108185954:-
Coord C1 exon
chr1:108185828-108185954
Coord A exon
chr1:108181941-108182028
Coord C2 exon
chr1:108161182-108161293
Length
88 bp
Sequences
Splice sites
3' ss Seq
CCCTTTTTATTTTTTTAAAGGAA
3' ss Score
9.98
5' ss Seq
AAGGTAAGC
5' ss Score
10.22
Exon sequences
Seq C1 exon
AAAATTTTTACTACTGGAGATGTCAACAAAGATGGGAAGCTGGATTTTGAAGAATTTATGAAGTACCTTAAAGACCATGAGAAGAAAATGAAATTGGCATTTAAGAGTTTAGACAAAAATAATGATG
Seq A exon
GAAAAATTGAGGCTTCAGAAATTGTCCAGTCTCTCCAGACACTGGGTCTGACTATTTCTGAACAACAAGCAGAGTTGATTCTTCAAAG
Seq C2 exon
CATTGATGTTGATGGGACAATGACAGTGGACTGGAATGAATGGAGAGACTACTTCTTATTTAATCCTGTTACAGACATTGAGGAAATTATCCGTTTCTGGAAACATTCTACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000085491_CASSETTE4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.008 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF134991=EF-hand_7=PD(36.1=51.2),PF134991=EF-hand_7=PU(27.3=41.9)
A:
PF134991=EF-hand_7=FE(43.9=100)
C2:
PF134991=EF-hand_7=PD(27.3=47.4)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGGAGATGTCAACAAAGATGGG
R:
GTAGTCTCTCCATTCATTCCAGTCC
Band lengths:
167-255
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains