RnoEX0081871 @ rn6
Exon Skipping
Gene
ENSRNOG00000020470 | Slc25a24
Description
solute carrier family 25 member 24 [Source:RGD Symbol;Acc:1311982]
Coordinates
chr2:211939398-211950262:+
Coord C1 exon
chr2:211939398-211939524
Coord A exon
chr2:211943051-211943138
Coord C2 exon
chr2:211950151-211950262
Length
88 bp
Sequences
Splice sites
3' ss Seq
GCTGTTTTCATTGTCTGAAGGGA
3' ss Score
5.73
5' ss Seq
AAGGTAAGC
5' ss Score
10.22
Exon sequences
Seq C1 exon
AAAATTTTCACCACTGGCGATGTCAACAAAGATGGGAAACTGGATTTTGAAGAATTTATGAAATACCTGAAAGACCATGAGAAGAAAATGAAATTAGCATTTAAAAGTCTGGACAAGAATAATGACG
Seq A exon
GGAAAATCGAGCCTTTTGAAATCGTCCAGTCTCTCCAGATGCTGGGCTTAAATATTTCTGAAAAGCAAGCAGAGCTGATTCTTCAAAG
Seq C2 exon
CATCGACTCTGACGGGACCATGACCGTGGACTGGAATGAATGGAGGGATTACTTTTTGTTTAACCCTGTGACAGACATTGAGGAAATTATTCGTTTCTGGAAACACTCTACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000020470_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF134991=EF-hand_7=PD(33.3=51.2),PF134991=EF-hand_7=PU(27.3=41.9)
A:
PF134991=EF-hand_7=FE(43.9=100)
C2:
PF134991=EF-hand_7=PD(27.3=47.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TTCACCACTGGCGATGTCAAC
R:
CCTCCATTCATTCCAGTCCACG
Band lengths:
167-255
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]