DreEX6033902 @ danRer10
Exon Skipping
Gene
ENSDARG00000005690 | slc25a23a
Description
solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 23a [Source:ZFIN;Acc:ZDB-GENE-121214-154]
Coordinates
chr1:54309256-54310655:-
Coord C1 exon
chr1:54310529-54310655
Coord A exon
chr1:54309871-54309958
Coord C2 exon
chr1:54309256-54309367
Length
88 bp
Sequences
Splice sites
3' ss Seq
CACTTCTGTGTGTTTTGTAGGTG
3' ss Score
10.97
5' ss Seq
AAGGTGTGT
5' ss Score
6.64
Exon sequences
Seq C1 exon
CAGATTGTACGAGCGGGAGACATCAATCACGACGGTCAGCTGGACTTCGAAGAGTTTACCGAGTACCTGCGCTCACATGAGAAACGCCTTAGACTCATGTTTCGCAGCCTGGACCGAAACAATGATG
Seq A exon
GTGAAGTGGATGTCGGGGAGATCCAGCAGTCCTTACACAATCTCGGCGTGGACATCACACTAGAACAGGCTGCTAAAATACTGCAAAG
Seq C2 exon
TATGGATAAAGATCATTCCATGACTATTGACTGGATCGAGTGGCGAGATCACTTCCTGTTCAACCCTCTACACAACATGGAGGAAATCGCTCAGTTCTGGAAGCACTCAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000005690-'2-3,'2-2,4-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.017 C2=0.000
Domain overlap (PFAM):
C1:
PF134991=EF-hand_7=PD(31.8=50.0),PF134991=EF-hand_7=PU(23.8=35.7)
A:
PF134991=EF-hand_7=FE(46.0=100)
C2:
PF134991=EF-hand_7=PD(28.6=47.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
ACATCAATCACGACGGTCAGC
R:
ACAGGAAGTGATCTCGCCACT
Band lengths:
167-255
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]