RnoEX0081859 @ rn6
Exon Skipping
Gene
ENSRNOG00000047781 | Slc25a23
Description
solute carrier family 25 member 23 [Source:RGD Symbol;Acc:1588586]
Coordinates
chr9:9989488-9991843:+
Coord C1 exon
chr9:9989488-9989614
Coord A exon
chr9:9990710-9990797
Coord C2 exon
chr9:9991732-9991843
Length
88 bp
Sequences
Splice sites
3' ss Seq
CTGGGGCTCCCCTTTTCCAGGTC
3' ss Score
10.5
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
GGCATCTCCTCTGACTGGGACAGTGATGCAGATGGCGGCCTCAGCCTGGAGGAGTTTACTCAGTACCTGCAGGAACGGGAGCAGCGCCTTCTGCTCATGTTTCACAGCCTTGACCGGAACCAGGATG
Seq A exon
GTCACATCGATGTCTCTGAGATTCAGCAGAGCTTCCGTGCACTGGGTTTCTCCATCTCAATGGAGCAAGCAGAGAAAATCCTACACAG
Seq C2 exon
CATGGACCGTGATGGCACCATGACCATTGATTGGCAGGAATGGCGAGACCACTTTCTGCTGCACTCTCTGGAGAATGTGGAGGATGTCCTTTATTTCTGGAAGCATTCAACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000047781-'2-5,'2-4,3-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.151 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF134991=EF-hand_7=PD(33.8=51.2),PF134991=EF-hand_7=PU(22.5=41.9)
A:
PF134991=EF-hand_7=FE(36.2=100)
C2:
PF134991=EF-hand_7=PD(40.0=84.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GCATCTCCTCTGACTGGGACA
R:
CTCGCCATTCCTGCCAATCAA
Band lengths:
173-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]