MmuEX0042861 @ mm9
Exon Skipping
Gene
ENSMUSG00000046329 | Slc25a23
Description
solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 23 [Source:MGI Symbol;Acc:MGI:1914222]
Coordinates
chr17:57194697-57197657:-
Coord C1 exon
chr17:57197531-57197657
Coord A exon
chr17:57196005-57196092
Coord C2 exon
chr17:57194697-57194808
Length
88 bp
Sequences
Splice sites
3' ss Seq
CTGGGGCTCCCCTTTTCCAGGTC
3' ss Score
10.5
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
GGTGTCTCCTCTGACTGGGATGCTGATCCTGATGGTGGCCTCAGCCTGGAGGAGTTTACTCGCTACCTGCAGGAACGGGAGCAGCGCCTTCTGCTCATGTTTCACAGCCTTGACCGGAACCAAGATG
Seq A exon
GTCACATAGATGTCTCTGAGATTCAACAGAGCTTCCGAGCACTAGGTATCTCCATCTCACTGGAGCAAGCAGAGAAAATCCTACACAG
Seq C2 exon
CATGGACCGCGATGGCACCATGACCATTGATTGGCAGGAATGGCGAGACCACTTTCTGTTGCACTCTCTGGAGAACGTGGAGGATGTCCTGTATTTCTGGAAGCATTCTACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000046329-'1-3,'1-2,3-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.256 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF134991=EF-hand_7=PD(33.8=51.2),PF134991=EF-hand_7=PU(28.4=44.2)
A:
PF134991=EF-hand_7=FE(43.3=100)
C2:
PF134991=EF-hand_7=PD(26.9=47.4)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGATGCTGATCCTGATGGT
R:
CAACAGAAAGTGGTCTCGCCA
Band lengths:
173-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: