MmuEX6073500 @ mm10
Exon Skipping
Gene
ENSMUSG00000027880 | Slc25a54
Description
solute carrier family 25, member 54 [Source:MGI Symbol;Acc:MGI:1921936]
Coordinates
chr3:109080469-109102855:+
Coord C1 exon
chr3:109080469-109080727
Coord A exon
chr3:109094208-109094295
Coord C2 exon
chr3:109102697-109102855
Length
88 bp
Sequences
Splice sites
3' ss Seq
AGTGTTTTCACTTTTTAAAGGCG
3' ss Score
5.54
5' ss Seq
AAGGTCAGC
5' ss Score
7.09
Exon sequences
Seq C1 exon
AGGCGTAGACCCGTGGCCCTGGGTGTAAGTGCTACGGTCTTCAGGGGTCGTGGCGGCCACGGTCTCCTGCTGGACGATGCTACGCAGGCTGCAGGACTTTCTGCTGCCCTCCGAGGCCTGCCAGAATGATTATAACCGCCTGGCCTATGAGGTCCTCTTTGAAGACCTGGACCACAATGGAGATGGTGTGGTGGACATCACGGAGCTCAGGGATGGGCTGAAACACTGGAACTCCTCGTTTAGCGAAGACACGGAGAAG
Seq A exon
GCGTAATAGATGCTTCAGAAATAGTCGCTGCCGTGAGATCATTGGGAATCCACATTTCTCTCTCTCAGGCCAAAGACATCTTGAAAAG
Seq C2 exon
ATAATTGATATAGGAGAGAGTATAAGTATTCCAGATGAATTTACAGAACAAGAGAAGATGTCTGGAGAATGGTGGAAGCGGTTAGTAGCAGCAGGAATAGCGAGTGCGATCACACGGACATGCACGGCACCTTTGGAACGCTTGAAAGTCACGATGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000027880_MULTIEX1-2/3=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF134991=EF-hand_7=PU(70.4=93.4),PF102234=DUF2181=PU(15.1=21.3)
A:
PF102234=DUF2181=FE(33.7=100),PF134991=EF-hand_7=FE(44.6=100)
C2:
PF0015322=Mito_carr=PU(35.1=62.3)
Main Skipping Isoform:
ENSMUST00000029478fB16860
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg19)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAGATGGTGTGGTGGACAT
R:
CTGCTGCTACTAACCGCTTCC
Band lengths:
176-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types