MmuEX6073500 @ mm9
Exon Skipping
Gene
ENSMUSG00000027880 | 4930443G12Rik
Description
RIKEN cDNA 4930443G12 gene [Source:MGI Symbol;Acc:MGI:1921936]
Coordinates
chr3:108888651-108901605:+
Coord C1 exon
chr3:108888651-108888777
Coord A exon
chr3:108897126-108897213
Coord C2 exon
chr3:108901494-108901605
Length
88 bp
Sequences
Splice sites
3' ss Seq
AGTGTTTTCACTTTTTAAAGGCG
3' ss Score
5.54
5' ss Seq
AAGGTCAGC
5' ss Score
7.09
Exon sequences
Seq C1 exon
GAGATTTTTATGGATGCAGATTCCAATGCTGATTCAGGACTGGATTTTGAAGAATTTGTGCAGTACCTTCAAGACCATGAGAAGAAAATGAAATTGGCCTTCAAGAGTCTGGACAAAAATGATGATG
Seq A exon
GCGTAATAGATGCTTCAGAAATAGTCGCTGCCGTGAGATCATTGGGAATCCACATTTCTCTCTCTCAGGCCAAAGACATCTTGAAAAG
Seq C2 exon
CATGGATTTTGACGGGTCGATGACAGTAGACTGGGATGAATGGAGAGATTTCTTTTTCTTCCACCCTGCAAAAAATATCACTGACATTGTTCGTTTCTGGAAGCATTCTACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000027880-'2-3,'2-2,3-3=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF134991=EF-hand_7=PD(27.2=51.2),PF102234=DUF2181=FE(49.4=100),PF134991=EF-hand_7=PU(26.2=39.5)
A:
PF102234=DUF2181=PD(32.9=93.3),PF134991=EF-hand_7=FE(44.6=100)
C2:
PF134991=EF-hand_7=PD(27.7=47.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGCAGTACCTTCAAGACCA
R:
TGCTTCCAGAAACGAACAATGT
Band lengths:
176-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: