RnoEX6011159 @ rn6
Exon Skipping
Gene
ENSRNOG00000027522 | Slc25a54
Description
solute carrier family 25, member 54 [Source:RGD Symbol;Acc:1583925]
Coordinates
chr2:211900950-211914368:+
Coord C1 exon
chr2:211900950-211901037
Coord A exon
chr2:211906206-211906317
Coord C2 exon
chr2:211914210-211914368
Length
112 bp
Sequences
Splice sites
3' ss Seq
CATTTAAAATTTTATTTCAGCAT
3' ss Score
6.46
5' ss Seq
ACTGTAAGG
5' ss Score
5.19
Exon sequences
Seq C1 exon
GCGTAATAGATGCTTCTGAAGTAGTTGCTGCCATGAAATCATTGGGAATCCACATTTCTCTCGCTCAGGCCAACGACATCCTGAAAAG
Seq A exon
CATGGATGCCGATGGGTCAATGACAGTAGACTGGGATGAATGGAGAGACTACTTTTTCTTTCACCCTGCAAAAAATGTCACCGACATTATTCGTTTCTGGAAGCATTCTACT
Seq C2 exon
ATAATTGATATAGGAGAGAGTGTAAGTATTCCAGATGAATTTACAGAACAAGAGAAGAAGTCTGGAGAATGGTGGAAGAGATTAGTAGCAGCAGGAATAGCGAGTGCGATCACACGGACGTGCACGGCGCCTTTGGACCGCTTGAAAGTCATGATACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000027522-'4-3,'4-2,5-3=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF134991=EF-hand_7=FE(43.9=100)
A:
PF134991=EF-hand_7=PD(27.3=47.4)
C2:
PF0015322=Mito_carr=PU(35.1=62.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGTAATAGATGCTTCTGAAGTAGT
R:
TCATGACTTTCAAGCGGTCCA
Band lengths:
242-354
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]