GgaEX1053080 @ galGal3
Exon Skipping
Gene
ENSGALG00000001938 | E1BW83_CHICK
Description
NA
Coordinates
chr8:1197266-1200622:-
Coord C1 exon
chr8:1200535-1200622
Coord A exon
chr8:1200009-1200120
Coord C2 exon
chr8:1197266-1197424
Length
112 bp
Sequences
Splice sites
3' ss Seq
GTTCTGTTTGGTTTTTTTAGTAT
3' ss Score
7.34
5' ss Seq
ACTGTAAGT
5' ss Score
8.59
Exon sequences
Seq C1 exon
GAAAAATTGAACCATCAGAAGTCGTCCAGTCCCTCAAGATACTGGGTATAAACATTTCAGAAAAACAGGCAGAGAAGATCCTTCAAAG
Seq A exon
TATTGATGCTGATGGAACAATGTCAGTAGATTGGAATGAGTGGAGAGATCATTTTATGTTTAACCCCGCTACAGACATAGAGGAAATAGTCCGGTATTGGAAACATTCCACT
Seq C2 exon
GTGCTGGATATTGGAGATAGTTTGACTGTTCCAGATGAGTTCACAGAGGAAGAAAAAAAGAGCGGACAATGGTGGAAGCAGCTCCTAGCAGGAGGAGTGGCTGGTGCTGTCTCACGAACAGGTACAGCACCTCTAGATCGTCTAAAAGTAATGATGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001938-'2-4,'2-2,3-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.033 A=0.000 C2=0.019
Domain overlap (PFAM):
C1:
PF137911=Sigma_reg_C=FE(24.2=100),PF102234=DUF2181=FE(23.8=100),PF134991=EF-hand_7=FE(43.3=100)
A:
PF137911=Sigma_reg_C=PD(0.8=2.6),PF102234=DUF2181=PD(10.7=34.2),PF134991=EF-hand_7=PD(28.4=50.0)
C2:
PF0015322=Mito_carr=PU(35.1=62.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
ATTGAACCATCAGAAGTCGTCCA
R:
CTGCATCATTACTTTTAGACGATCT
Band lengths:
242-354
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]