MmuEX6073505 @ mm10
Exon Skipping
Gene
ENSMUSG00000040322 | Slc25a24
Description
solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 24 [Source:MGI Symbol;Acc:MGI:1917160]
Coordinates
chr3:109136212-109157005:+
Coord C1 exon
chr3:109136212-109136338
Coord A exon
chr3:109154994-109155105
Coord C2 exon
chr3:109156847-109157005
Length
112 bp
Sequences
Splice sites
3' ss Seq
TCATCTGTTTAAACTTTCAGCAT
3' ss Score
7.34
5' ss Seq
ACTGTAAGT
5' ss Score
8.59
Exon sequences
Seq C1 exon
AAAATTTTCACCACTGGCGATGTCAACAAAGATGGGAAGCTGGATTTTGAAGAATTTATGAAATACCTGAAAGACCATGAGAAGAAAATGAAATTAGCATTTAAAAGTTTGGACAAGAATAATGACG
Seq A exon
CATCGACTCTGATGGGACGATGACCGTGGACTGGAATGAATGGAGGGATTACTTTTTATTTAACCCTGTGACAGACATTGAGGAAATTATCCGTTTCTGGAAACACTCTACT
Seq C2 exon
GGAATTGACATAGGGGATAGTTTAACTATTCCAGATGAATTCACAGAAGATGAGAAAAAATCAGGACAGTGGTGGAGGCAGCTCCTGGCAGGAGGTGTGGCGGGCGCCGTCTCTAGAACGAGCACCGCTCCTTTGGATCGCCTCAAGGTCATGATGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000040322-'2-14,'2-5,11-14=AN
Average complexity
A_C3
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.023 A=0.111 C2=0.019
Domain overlap (PFAM):
C1:
PF134991=EF-hand_7=PD(33.3=51.2),PF134991=EF-hand_7=PU(27.3=41.9)
A:
PF134991=EF-hand_7=PD(27.3=47.4)
C2:
PF0015322=Mito_carr=PU(35.9=62.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TTCACCACTGGCGATGTCAAC
R:
GAGCGGTGCTCGTTCTAGAGA
Band lengths:
251-363
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types