RnoEX0081865 @ rn6
Exon Skipping
Gene
ENSRNOG00000020470 | Slc25a24
Description
solute carrier family 25 member 24 [Source:RGD Symbol;Acc:1311982]
Coordinates
chr2:211948989-211952318:+
Coord C1 exon
chr2:211948989-211949089
Coord A exon
chr2:211950151-211950262
Coord C2 exon
chr2:211952160-211952318
Length
112 bp
Sequences
Splice sites
3' ss Seq
TCATCTGCTTAAACTTTCAGCAT
3' ss Score
7.02
5' ss Seq
ACTGTAAGT
5' ss Score
8.59
Exon sequences
Seq C1 exon
GGAGGAGACAGGAACAGAAAGGAGACTGGAGGTAGAGGGAGAGAAGCTGTGGGAGGAGAATATGGCGGCCGACGTTAAGATTCCACGCTGTACCTTTACAG
Seq A exon
CATCGACTCTGACGGGACCATGACCGTGGACTGGAATGAATGGAGGGATTACTTTTTGTTTAACCCTGTGACAGACATTGAGGAAATTATTCGTTTCTGGAAACACTCTACT
Seq C2 exon
GGAATTGACATAGGCGATAGTTTAACTATTCCGGATGAATTCACAGAAGATGAGAAAAAATCAGGACAGTGGTGGAGGCAGCTCCTGGCAGGAGGTGTGGCTGGCGCTGTCTCCAGGACAAGCACCGCTCCTTTGGATCGCCTAAAGGTCATGATGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000020470-'4-5,'4-4,5-5
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF134991=EF-hand_7=PD(27.3=47.4)
C2:
PF0015322=Mito_carr=PU(35.9=62.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
AAGGAGACTGGAGGTAGAGGGA
R:
CTGCATCATGACCTTTAGGCGA
Band lengths:
242-354
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]