BtaEX6016205 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000003752 | SLC25A24
Description
Bos taurus solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 24 (SLC25A24), mRNA. [Source:RefSeq mRNA;Acc:NM_001099066]
Coordinates
chr3:35168033-35180125:+
Coord C1 exon
chr3:35168033-35168120
Coord A exon
chr3:35175601-35175712
Coord C2 exon
chr3:35179967-35180125
Length
112 bp
Sequences
Splice sites
3' ss Seq
CAGCTTCTTTTTGTTTTCAGCAT
3' ss Score
7.87
5' ss Seq
ACTGTGAGT
5' ss Score
7.94
Exon sequences
Seq C1 exon
GAAAAATTGAGGCTTCTGAAATTGTCCAGTCTCTCCAGATACTAGGTCTAACTATTTCTGAACAACAAGCAGAATTGATTCTTCAAAG
Seq A exon
CATTGATGCCGATGGGACAATGACAGTGGACTGGAATGAATGGCGAGACTACTTCTTATTTAACCCCGTTACAGATATTGAGGAAATCATCCGTTTCTGGAAACATTCTACT
Seq C2 exon
GGTATTGACATAGGAGATAGTTTAACTATTCCAGATGAATTCACAGAAGATGAAAAAAAGTCGGGACAGTGGTGGAGGCAGCTTTTGGCAGGAGGTGTTGCCGGGGCCGTCTCTCGGACAAGCACGGCCCCTCTGGATCGTCTGAAAGTCATGATGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003752-'5-5,'5-4,6-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.019
Domain overlap (PFAM):
C1:
PF134991=EF-hand_7=FE(43.9=100)
A:
PF134991=EF-hand_7=PD(27.3=47.4)
C2:
PF0015322=Mito_carr=PU(35.1=62.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
ATTGAGGCTTCTGAAATTGTCCAGT
R:
CTGCATCATGACTTTCAGACGA
Band lengths:
242-354
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]