GgaEX1053080 @ galGal4
Exon Skipping
Gene
ENSGALG00000001938 | SLC25A24
Description
solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 24 [Source:HGNC Symbol;Acc:HGNC:20662]
Coordinates
chr8:1188868-1192224:-
Coord C1 exon
chr8:1192137-1192224
Coord A exon
chr8:1191611-1191722
Coord C2 exon
chr8:1188868-1189026
Length
112 bp
Sequences
Splice sites
3' ss Seq
GTTCTGTTTGGTTTTTTTAGTAT
3' ss Score
7.34
5' ss Seq
ACTGTAAGT
5' ss Score
8.59
Exon sequences
Seq C1 exon
GAAAAATTGAACCATCAGAAGTCGTCCAGTCCCTCAAGATACTGGGTATAAACATTTCAGAAAAACAGGCAGAGAAGATCCTTCAAAG
Seq A exon
TATTGATGCTGATGGAACAATGTCAGTAGATTGGAATGAGTGGAGAGATCATTTTATGTTTAACCCCGCTACAGACATAGAGGAAATAGTCCGGTATTGGAAACATTCCACT
Seq C2 exon
GTGCTGGATATTGGAGATAGTTTGACTGTTCCAGATGAGTTCACAGAGGAAGAAAAAAAGAGCGGACAATGGTGGAAGCAGCTCCTAGCAGGAGGAGTGGCTGGTGCTGTCTCACGAACAGGTACAGCACCTCTAGATCGTCTAAAAGTAATGATGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001938-'2-4,'2-2,3-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.019
Domain overlap (PFAM):
C1:
PF134991=EF-hand_7=FE(42.6=100)
A:
PF134991=EF-hand_7=PD(26.5=47.4)
C2:
PF0015322=Mito_carr=PU(35.1=62.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
ATTGAACCATCAGAAGTCGTCCA
R:
CTGCATCATTACTTTTAGACGATCT
Band lengths:
242-354
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]