HsaEX6032494 @ hg38
Exon Skipping
Gene
ENSG00000085491 | SLC25A24
Description
solute carrier family 25 member 24 [Source:HGNC Symbol;Acc:HGNC:20662]
Coordinates
chr1:108157462-108182028:-
Coord C1 exon
chr1:108181941-108182028
Coord A exon
chr1:108161182-108161293
Coord C2 exon
chr1:108157462-108157620
Length
112 bp
Sequences
Splice sites
3' ss Seq
TCATTTTTTTAAAATTTCAGCAT
3' ss Score
7.05
5' ss Seq
ACAGTAAGT
5' ss Score
9.49
Exon sequences
Seq C1 exon
GAAAAATTGAGGCTTCAGAAATTGTCCAGTCTCTCCAGACACTGGGTCTGACTATTTCTGAACAACAAGCAGAGTTGATTCTTCAAAG
Seq A exon
CATTGATGTTGATGGGACAATGACAGTGGACTGGAATGAATGGAGAGACTACTTCTTATTTAATCCTGTTACAGACATTGAGGAAATTATCCGTTTCTGGAAACATTCTACA
Seq C2 exon
GGAATTGACATAGGGGATAGCTTAACTATTCCAGATGAATTCACGGAAGACGAAAAAAAATCCGGACAATGGTGGAGGCAGCTTTTGGCAGGAGGCATTGCTGGTGCTGTCTCTCGAACAAGCACTGCCCCTTTGGACCGTCTGAAAATCATGATGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000085491-'15-19,'15-16,20-19
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.019
Domain overlap (PFAM):
C1:
PF134991=EF-hand_7=FE(43.9=100)
A:
PF134991=EF-hand_7=PD(27.3=47.4)
C2:
PF0015322=Mito_carr=PU(35.1=62.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
ATTGAGGCTTCAGAAATTGTCCAGT
R:
CTGCATCATGATTTTCAGACGGT
Band lengths:
242-354
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains