DreEX0072302 @ danRer10
Exon Skipping
Gene
ENSDARG00000008568 | slc25a24
Description
solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 24 [Source:ZFIN;Acc:ZDB-GENE-040912-183]
Coordinates
chr20:34758556-34763216:-
Coord C1 exon
chr20:34763129-34763216
Coord A exon
chr20:34761287-34761398
Coord C2 exon
chr20:34758556-34758714
Length
112 bp
Sequences
Splice sites
3' ss Seq
TTTGACCCTTTATCCTCCAGCAT
3' ss Score
8.48
5' ss Seq
ACTGTAAGT
5' ss Score
8.59
Exon sequences
Seq C1 exon
GTCGCGTCGATGCCAAAGAGATTCAACAGTCACTAAAAGACCTCGGGATTAACTTGTCAGATAAAGACGCTGAGAAGATCCTCCACAG
Seq A exon
CATTGATGTGGATGGAACCATGACTCTGGACTGGAATGAATGGAGGGAGCATTTCCTCTTTAACCCTGCAGAAGATCTTCAGCAGATCATACGCTACTGGAAAAAATCAACT
Seq C2 exon
GTGTTGGACATAGGTGACAGTCTGACTATACCAGATGAGTTCACCGAGGAGGAGAAGACCACCGGCATGTGGTGGAAACAGCTTGCTGCTGGTGGTGTGGCAGGGGCAGTCTCTCGAACAGGCACCGCCCCCCTTGACAGAATGAAAGTCTTCATGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000008568-'2-5,'2-2,3-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.067 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF134991=EF-hand_7=FE(44.6=100)
A:
PF134991=EF-hand_7=PD(27.7=47.4)
C2:
PF0015322=Mito_carr=PU(35.1=62.3)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GTCGCGTCGATGCCAAAGAG
R:
TGAAGACTTTCATTCTGTCAAGGGG
Band lengths:
242-354
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]