MmuEX6100555 @ mm10
Exon Skipping
Gene
ENSMUSG00000026819 | Slc25a25
Description
solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 25 [Source:MGI Symbol;Acc:MGI:1915913]
Coordinates
chr2:32419048-32421390:-
Coord C1 exon
chr2:32421303-32421390
Coord A exon
chr2:32420305-32420416
Coord C2 exon
chr2:32419048-32419206
Length
112 bp
Sequences
Splice sites
3' ss Seq
GACCATGCTTCTGCTTACAGCAT
3' ss Score
7.69
5' ss Seq
ACGGTGAGG
5' ss Score
9.2
Exon sequences
Seq C1 exon
GTCGAATCGATGCTCAGGAGATCATGCAGTCCCTGCGGGACCTGGGTGTCAAGATCTCGGAACAGCAGGCGGAGAAGATTCTTAAGAG
Seq A exon
CATGGATAAGAATGGCACGATGACCATCGACTGGAACGAGTGGAGGGACTACCACCTCCTGCACCCTGTGGAGAACATCCCGGAGATCATCCTGTACTGGAAGCACTCGACG
Seq C2 exon
ATCTTCGATGTCGGTGAGAATCTGACAGTCCCAGATGAGTTCACAGTGGAGGAGAGGCAGACGGGGATGTGGTGGAGGCACCTGGTGGCAGGAGGTGGGGCAGGGGCAGTTTCCAGAACCTGCACTGCCCCCCTGGACAGACTGAAGGTGCTCATGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026819-'8-16,'8-15,10-16
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.004 A=0.003 C2=0.000
Domain overlap (PFAM):
C1:
PF0003627=EF-hand_1=PU(28.0=31.8)
A:
PF0003627=EF-hand_1=PD(68.0=44.7)
C2:
PF0015322=Mito_carr=PU(35.1=62.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GTCGAATCGATGCTCAGGAGA
R:
TGAGCACCTTCAGTCTGTCCA
Band lengths:
242-354
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types